CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_POU6F

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: POU6F       TFBS class: POU = Octamer (POU)       Code: 3.1.2.6.1.2
Pattern = GCATAAWTTAT (core elements are bold)     Class: POU6F     Allowed mismatch: 0.2     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$POU6F1_01 GCATAAWTTAT
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U036668Pou6f1POU domain, class 6, transcription factor 1

Protein domains:
IPR009057 Homeodomain-like
IPR010982 Lambda repressor-like, DNA-binding
IPR000327 POU
IPR011028 Cyclin-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR007103 POU homeobox
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend