CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_RFX

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: RFX       TFBS class: FH = Fork head       Code: 3.3.4.1
Pattern = GTHRCCWRGYAAC (core elements are bold)     Class: RFX     Allowed mismatch: 0.124     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$RFX1_01 NNGTNRCNWRGYAACNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U003551Rfx5regulatory factor X, 5 (influences HLA class II expression)
U009566Rfx1regulatory factor X, 1 (influences HLA class II expression)
U011827Rfx4regulatory factor X, 4 (influences HLA class II expression)
U024054Rfxapregulatory factor X-associated protein
U029908Rfxankregulatory factor X-associated ankyrin-containing protein
U037958Rfx2regulatory factor X, 2 (influences HLA class II expression)
U199160Rfx3regulatory factor X, 3 (influences HLA class II expression)

GO terms:
GO:0007265 Ras protein signal transduction
GO:0016563 transcriptional activator activity

Protein domains:
IPR003150 DNA-binding RFX
IPR001093 IMP dehydrogenase/GMP reductase
IPR007668 RFX1 transcription activation region
IPR000637 HMG-I and HMG-Y, DNA-binding
IPR002173 Carbohydrate kinase, PfkB
IPR002110 Ankyrin

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend