CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_RFX1

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: RFX1       TFBS class: FH = Fork head       Code: 3.3.4.1.1
Pattern = GTHRCCATRGYAAC (core elements are bold)     Class: RFX1     Allowed mismatch: 0.14     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$RFX1_02 NNGTNRCNATRGYAACNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U009566Rfx1regulatory factor X, 1 (influences HLA class II expression)

Protein domains:
IPR007668 RFX1 transcription activation region
IPR003150 DNA-binding RFX
IPR001093 IMP dehydrogenase/GMP reductase
IPR002173 Carbohydrate kinase, PfkB

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend