CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_RORA

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: RORA       TFBS class: HR = Hormone receptor       Code: 2.1.2
Pattern = WAWSTAGGTCA (core elements are bold)     Class: RORA     Allowed mismatch: 0.114
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$RORA1_01 NWAWNNAGGTCAN
+
V$RORA2_01 NWAWNTAGGTCAN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U001058Rxrgretinoid X receptor gamma
U001539Rxraretinoid X receptor alpha
U013319Rararetinoic acid receptor, alpha
U035259Rarbretinoic acid receptor, beta
U036693Rargretinoic acid receptor, gamma
U043589Rxrbretinoid X receptor beta

GO terms:
GO:0004872 receptor activity
GO:0004879 ligand-dependent nuclear receptor activity
GO:0003707 steroid hormone receptor activity
GO:0003708 retinoic acid receptor activity
GO:0005496 steroid binding
GO:0001657 ureteric bud development

Protein domains:
IPR008946 Steroid nuclear receptor, ligand-binding
IPR001723 Steroid hormone receptor
IPR000536 Ligand-binding region of nuclear hormone receptor
IPR001628 Zn-finger, C4-type steroid receptor
IPR000324 Vitamin D receptor
IPR001093 IMP dehydrogenase/GMP reductase
IPR000003 Retinoid X receptor
IPR003078 Retinoic acid receptor

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend