CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_S8

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: S8       TFBS class: HOX = Homeobox       Code: 3.1.1.9.5
Pattern = YYAATTARC (core elements are bold)     Class: S8     Allowed mismatch: 0.024     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$S8_01 WNNANYYAATTANCNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U001592Prrx2paired related homeobox 2

GO terms:
GO:0007275 development

Protein domains:
IPR000047 Helix-turn-helix motif, lambda-like repressor
IPR009057 Homeodomain-like
IPR001356 Homeobox
IPR007104 Paired-like homeobox
IPR003654 Paired-like homeodomain protein, OAR

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend