CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_SOX9

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: SOX9       TFBS class: HMG = High mobility group       Code: 4.7.1.0
Pattern = DAACAAT (core elements are bold)     Class: SOX9     Allowed mismatch: 0.064
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$SOX5_01 __NNAACAAT
+
V$SOX9_B1 NNNNAACAATRGNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U013510Sox9SRY-box containing gene 9

GO terms:
GO:0030154 cell differentiation
GO:0001502 cartilage condensation
GO:0019100 male germ-line sex determination
GO:0007507 heart development
GO:0001708 cell fate specification
GO:0008584 male gonad development
GO:0001837 epithelial to mesenchymal transition

Protein domains:
IPR000910 HMG1/2 (high mobility group) box
IPR009071 High mobility group box

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend