CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_SREBP1

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: SREBP1       TFBS class: bHLH = Helix-loop-helix       Code: 1.3.1.3.1
Pattern = ATCACGTGA (core elements are bold)     Class: SREBP1     Allowed mismatch: 0.147     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$SREBP1_01 NATCACGTGAY
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U032863Srebf1sterol regulatory element binding factor 1

GO terms:
GO:0006629 lipid metabolism
GO:0005783 endoplasmic reticulum
GO:0005794 Golgi apparatus
GO:0008203 cholesterol metabolism
GO:0008202 steroid metabolism

Protein domains:
IPR001092 Basic helix-loop-helix dimerisation region bHLH
IPR001093 IMP dehydrogenase/GMP reductase
IPR011598 Helix-loop-helix DNA-binding

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend