CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_SRF

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: SRF       TFBS class: MADS = MADS box       Code: 4.4.2.0.1
Pattern = CCATATAWGG (core elements are bold)     Class: SRF     Allowed mismatch: 0.2     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$SRF_01 ATGCCCATATATGGWNNT
+
V$SRF_Q6 __GNCCAWATAWGG
+
V$SRF_C ___DCCWTATATGGN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U037861Srfserum response factor

GO terms:
GO:0007507 heart development
GO:0046716 muscle maintenance
GO:0005215 transporter activity

Protein domains:
IPR005829 Sugar transporter superfamily
IPR002100 Transcription factor, MADS-box

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend