CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_STAF

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: STAF       TFBS class: ZF = Zinc finger       Code: 2.3
Pattern = TWCCCABMATGCA (core elements are bold)     Class: STAF     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$STAF_01 NTTWCCCANMATGCAYYRCGNY
+
V$STAF_02 MNTTCCCAKMATKCMWNGCRA
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U008625Zfp143zinc finger protein 143

GO terms:
GO:0006359 regulation of transcription from RNA polymerase III promoter
GO:0003709 RNA polymerase III transcription factor activity
GO:0008270 zinc ion binding

Protein domains:
IPR007087 Zn-finger, C2H2 type
IPR001093 IMP dehydrogenase/GMP reductase

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend