CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_TATA

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: TATA       TFBS class: TATA = TATA box       Code: 4.6.1.0.1
Pattern = STATAAAW (core elements are bold)     Class: TATA     Allowed mismatch: 0.03
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$TATA_C NCTATAAAAR
+
V$TATA_01 _STATAAAWRNNNNN
+
V$TBP_01 __TATAAAT
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U017529TbpTATA box binding protein

GO terms:
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0000120 RNA polymerase I transcription factor complex
GO:0005669 transcription factor TFIID complex

Protein domains:
IPR012294 Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal
IPR000814 Transcription factor TFIID

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend