Overlap of ADD_FOXP1 with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_FOXP1 with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_FOXP1	Abundance of TF2
1	MIT_060FOXO	19624	26.33	12.81	74510	148519
2	ADD_FOXJ1	19096	25.62	16.26	74510	85923
3	TF_POLYA	18418	24.71	21.82	74510	66779
4	TF_SRY	17316	23.23	11.19	74510	85717
5	TF_HNF3	12683	17.02	4.14	74510	115315
6	TF_FOXD	11848	15.9	6.69	74510	93909
7	ADD_PIT	7174	9.62	6.54	74510	353844
8	TF_HFH	6902	9.26	5.12	74510	70651
9	TF_MRF2	6894	9.25	7.09	74510	53561
10	ADD_FOXP1	6481	8.69	0.96	74510	74510
11	MIT_033MEF2	6429	8.62	4.18	74510	49917
12	TF_MEF2	6343	8.51	4.65	74510	70569
13	MIT_051TATA	6256	8.39	7.9	74510	93379
14	MIT_083HNF3	5255	7.05	3.54	74510	60354
15	MIT_170	4834	6.48	4.42	74510	37873
16	TF_CART	4799	6.44	3.14	74510	105419

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_060FOXO	10 - 14	+a+b	2889	995.2	2.902	1	1.3	14.14	0	0
2	MIT_083HNF3	10 - 14	+a+b	1050	364.5	2.88	0.9	1.1	8.228	0	0
3	MIT_131GATA	90 - 94	+b+a	62	20.2	3.069	0.7	0.7	8.032	0	0
4	MIT_151	20 - 24	+b+a	39	14.6	2.671	0.5	1	7.332	0	0
5	TF_SRY	10 - 14	+a-b	3344	1047.8	3.191	1	1.8	5.498	0	0
6	TF_E2F	65 - 69	+a-b	35	15.3	2.287	1	1.1	5.439	0	0
7	MIT_139FOXJ1	15 - 19	+a-b	579	230.9	2.507	1.1	1.1	3.637	0.0016	0.003
8	NCBI_004	115 - 119	+b+a	35	16.8	2.083	1.2	0.7	4.026	0.0026	0.0047

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