Overlap of ADD_FOXP3 with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_FOXP3 with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_FOXP3	Abundance of TF2
1	TF_HNF3	4022	52.28	38.39	7693	115315
2	TF_FOXD	3733	48.52	37.64	7693	93909
3	TF_HFH	1733	22.52	19.23	7693	70651
4	MIT_060FOXO	1714	22.27	20.65	7693	148519
5	TF_XVENT	1504	19.55	21.25	7693	52087
6	TF_FOXO	1398	18.17	15.91	7693	61084
7	ADD_FOXJ1	1362	17.7	16.12	7693	85923
8	TF_SOX9	1298	16.87	18.83	7693	65322
9	MIT_036FOXO	1248	16.22	13.59	7693	47427
10	TF_POU6F	1226	15.93	10.13	7693	70834
11	ADD_PIT	1208	15.7	10.78	7693	353844
12	MIT_083HNF3	1153	14.98	13.28	7693	60354
13	MIT_139FOXJ1	1086	14.11	10.02	7693	26302
14	TF_SRY	1038	13.49	11.81	7693	85717
15	ADD_HMG	740	9.61	8.82	7693	153281
16	TF_CLOX	595	7.73	5.18	7693	74680
17	TF_S8	531	6.9	4.65	7693	87776
18	TF_CART	477	6.2	3.05	7693	105419
19	TF_PBX	438	5.69	4.61	7693	76486
20	MIT_064AP1	430	5.58	4.06	7693	64033
21	TF_LHX	410	5.32	2.26	7693	96236
22	TF_MEF2	392	5.09	2.91	7693	70569

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	TF_HNF3	10 - 14	+a+b	243	73.8	3.292	1.4	1	5.072	0	0
2	TF_SRY	10 - 14	+a-b	88	33.2	2.65	0.8	2.2	5.019	0	0

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	TF_COMP	80 - 84	+b+a	31	5.4	5.74	1.1	79.1	12.392	0	0
2	TF_NFY	85 - 89	-b+a	32	6.6	4.848	0.9	49.9	10.557	0	0
3	ADD_FOXJ1	10 - 14	+b+a	87	31.6	2.753	0.7	2.8	5.802	0	0
4	TF_HFH	10 - 14	+a+b	61	23.4	2.606	0.7	3.1	5.356	0	0
5	TF_FOXD	10 - 14	+a-b	207	64.1	3.229	1	5.7	4.704	0	0

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