CisView Mouse (mm6, March 2005)

Overlap of ADD_FXRDR3 with other TFBS

No.TF2N overlapOverlap, %Overlap in
random seq., %
Abundance
of ADD_FXRDR3
Abundance
of TF2
1TF_RORA
1595
11.49
8.45
13878
49245
2ADD_SF1B
1492
10.75
12.1
13878
48790
3MIT_025SF1
1236
8.9
5.76
13878
37697
4TF_BRACH
881
6.34
8.67
13878
10354
5TF_COUP
785
5.65
4.42
13878
48497

Over-represented distances with other TFBS

No.TF2Distance
Orienta-
sion
N pairsN backgr.
Ratio
Ratio
in random
Ratio
in repeats
Z
P
FDRDistribution
1MIT_058IPF1
10 - 14
+b+a
32
9.5
3.368
1.4
1.2
6.947
0
0
2TF_NFY
25 - 29
+a+b
39
16.6
2.349
0.9
0.9
5.968
0
0
3TF_HNF4
25 - 29
-b+a
44
19.6
2.244
0.9
0.3
4.516
0
0.0001
4TF_RFX
45 - 49
+b+a
39
15.8
2.468
0.8
0.8
4.349
0.0002
0.0004
5TF_HFH
40 - 44
+a-b
53
24.6
2.154
0.9
1.6
3.901
0.0015
0.0028

Repeat-based over-represented distances with other TFBS

No.TF2Distance
Orienta-
sion
N pairsN backgr.
Ratio
Ratio
in random
Ratio
in repeats
Z
P
FDRDistribution
1ADD_HOGNESS
80 - 84
+b+a
110
1.9
57.894
0
67.7
88.026
0
0
2ADD_TANTIGEN
55 - 59
+b+a
158
3.8
41.578
0
185.3
73.205
0
0
3NCBI_003
35 - 39
-b+a
95
1.5
63.333
0
1661.8
59.806
0
0
4MIT_093PITX
75 - 79
-b+a
123
10.5
11.714
0.8
57.2
38.116
0
0
5ADD_PITX
75 - 79
+b+a
123
10.5
11.714
0.8
57.3
37.307
0
0
6MIT_031
95 - 99
+b+a
48
3.8
12.631
1.1
73.8
26.425
0
0
7TF_LYF
65 - 69
+b+a
82
10.2
8.039
0.8
67.5
26.091
0
0
8TF_HMX
70 - 74
-b+a
73
9.3
7.849
0.8
63
22.281
0
0
9TF_AHR
85 - 89
-b+a
94
14.9
6.308
0.9
61
20.948
0
0
10ADD_SF1A
35 - 39
+b+a
34
3.7
9.189
1.1
251.8
12.02
0
0
11ADD_CIZ
30 - 34
+b+a
35
6.3
5.555
1
151.7
10.375
0
0
12MIT_013LEF
15 - 19
-b+a
116
37.5
3.093
0.9
127
9.385
0
0
13TF_E47
50 - 54
+b+a
53
13.5
3.925
1.2
84.4
8.403
0
0
14ADD_HMG
15 - 19
+b+a
137
54
2.537
1
87.3
7.959
0
0
15MIT_012MYOD
50 - 54
+b+a
69
25.4
2.716
1.1
53.1
7.66
0
0
16ADD_LRH
35 - 39
+b+a
62
21.3
2.91
1
103
7.334
0
0
17ADD_GCNF
35 - 39
+b+a
49
23.6
2.076
0.9
83
3.182
0.0204
0.0357

Legend