Overlap of ADD_GCNF with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_GCNF with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_GCNF	Abundance of TF2
1	ADD_LRH	19411	33.58	28.08	57792	55737
2	MIT_025SF1	6724	11.63	7.38	57792	37697
3	ADD_SF1A	6207	10.74	6.16	57792	9430
4	TF_RORA	5646	9.76	7.2	57792	49245
5	TF_ER	4582	7.92	7.86	57792	48303
6	MIT_038SF1	4428	7.66	3.69	57792	6547
7	TF_ARP1	3014	5.21	4.85	57792	48243

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_037	10 - 14	+a-b	37	6	6.166	0.3	0.3	9.953	0	0
2	TF_MIF	10 - 14	-b+a	40	13.7	2.919	0.7	1.6	7.308	0	0
3	MIT_129	15 - 19	+a-b	61	26.2	2.328	1	1.1	6.097	0	0
4	ADD_FXRIR1	30 - 34	+a-b	32	10.4	3.076	1.1	0.6	5.493	0	0
5	ADD_TTF1A	50 - 54	+b+a	51	20.2	2.524	0.9	0.9	5.469	0	0
6	MIT_135	20 - 24	+a-b	33	10.6	3.113	1.2	0.9	5.115	0	0

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_HOGNESS	45 - 49	+b+a	42	1.4	30	0	59.8	32.573	0	0
2	ADD_TANTIGEN	20 - 24	+b+a	86	5.9	14.576	0	29.9	19.021	0	0
3	ADD_PITX	40 - 44	+b+a	114	46.2	2.467	0.8	25.3	7.563	0	0
4	MIT_093PITX	40 - 44	-b+a	114	46.7	2.441	0.9	25.3	7.452	0	0
5	MIT_031	60 - 64	+b+a	41	19.4	2.113	0.8	26.5	6.08	0	0
6	ADD_FXRDR3	35 - 39	+b+a	49	23.6	2.076	0.9	83	3.182	0.0204	0.0357

Legend