Overlap of ADD_HMG with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_HMG with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_HMG	Abundance of TF2
1	MIT_073LEF	49618	32.37	27.82	153281	83859
2	MIT_013LEF	49543	32.32	32	153281	94229
3	MIT_060FOXO	20454	13.34	10.54	153281	148519
4	TF_SOX9	18671	12.18	11.05	153281	65322
5	TF_HNF4	14275	9.31	9.59	153281	56725
6	TF_SRY	12929	8.43	6.72	153281	85717
7	MIT_049SOX	10976	7.16	6.2	153281	18769
8	ADD_PIT	9912	6.46	3.99	153281	353844
9	ADD_SOX	9471	6.17	5.7	153281	9555
10	ADD_FOXJ1	8886	5.79	4.71	153281	85923
11	TF_CLOX	7787	5.08	3.76	153281	74680
12	TF_GFI	7773	5.07	3.25	153281	56069
13	TF_ARP1	7716	5.03	4.51	153281	48243

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_TTF1B	5 - 9	+a+b	61	13	4.692	1.6	2.7	12.153	0	0
2	MIT_053MIF	35 - 39	+a+b	31	7.3	4.246	1	0.8	10.672	0	0
3	MIT_149	80 - 84	+a+b	32	14.2	2.253	1	1.4	4.567	0.0001	0.0003
4	MIT_151	30 - 34	+b+a	66	32.6	2.024	0.9	1.1	3.927	0.001	0.0019

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_HOGNESS	65 - 69	+b+a	78	2.2	35.454	0	45.6	34.625	0	0
2	NCBI_003	20 - 24	-b+a	61	2.7	22.592	0.8	227.1	33.398	0	0
3	ADD_TANTIGEN	35 - 39	+b+a	103	6.7	15.373	0.6	38.5	28.972	0	0
4	ADD_FXRDR3	15 - 19	+b+a	137	54	2.537	1	87.3	7.959	0	0
5	MIT_154	10 - 14	+a-b	48	19.8	2.424	0.9	2.8	7.155	0	0

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