Overlap of ADD_HOGNESS with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_HOGNESS with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_HOGNESS	Abundance of TF2
1	ADD_PITX	398	64.19	0	620	32286
2	MIT_093PITX	395	63.7	0	620	32355
3	TF_AHR	236	38.06	0	620	61354
4	TF_LYF	154	24.83	0	620	33146
5	TF_HMX	152	24.51	0	620	29930
6	MIT_031	117	18.87	0	620	13989
7	ADD_TEF1	91	14.67	0	620	81065
8	TF_STAF	74	11.93	0	620	39909
9	TF_AML	60	9.67	0	620	68750

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_012MYOD	30 - 34	+a+b	83	1	83	0	78.2	233.65	0	0

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_TANTIGEN	25 - 29	+a+b	300	5	60	0	839.2	208.383	0	0
2	TF_E47	30 - 34	+a+b	73	1	73	0	83.6	155.274	0	0
3	NCBI_003	45 - 49	+a-b	130	1	130	0	455.6	93.668	0	0
4	ADD_FXRDR3	80 - 84	+b+a	110	1.9	57.894	0	67.7	88.026	0	0
5	TF_STAT	75 - 79	+a-b	134	2.4	55.833	0	113	70.667	0	0
6	MIT_013LEF	65 - 69	+a-b	80	2.3	34.782	0	68.8	64.607	0	0
7	ADD_HMG	65 - 69	+b+a	78	2.2	35.454	0	45.6	34.625	0	0
8	ADD_GCNF	45 - 49	+b+a	42	1.4	30	0	59.8	32.573	0	0
9	ADD_LRH	45 - 49	+a+b	34	1.2	28.333	0	42.6	29.61	0	0

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