Overlap of ADD_HOXA4 with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_HOXA4 with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_HOXA4	Abundance of TF2
1	TF_LHX	7684	41.47	34.66	18528	96236
2	TF_CART	4249	22.93	14.18	18528	105419
3	ADD_NANOG	3713	20.03	22.72	18528	43529
4	TF_MSX	3122	16.85	22.41	18528	40102
5	TF_CHX	2840	15.32	15.2	18528	82243
6	TF_NFY	2669	14.4	14.78	18528	54933
7	TF_SOX9	1822	9.83	7.91	18528	65322
8	MIT_168	1745	9.41	6.48	18528	12416
9	ADD_PIT	1645	8.87	5.91	18528	353844
10	TF_HNF1	1616	8.72	7.37	18528	66746
11	TF_CEBP	1526	8.23	6.8	18528	51516
12	TF_CDP	1287	6.94	4.88	18528	70665
13	TF_POU3F	1003	5.41	3.14	18528	78035

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	TF_CEBP	85 - 89	+a+b	44	19.9	2.211	1.4	0.7	9.031	0	0
2	TF_AML	5 - 9	+a-b	71	26.4	2.689	1.2	0.7	8.044	0	0
3	MIT_111AML	5 - 9	+a+b	34	8.7	3.908	1.8	0.9	6.427	0	0
4	MIT_036FOXO	5 - 9	+b+a	96	29.6	3.243	1.6	1.5	6.266	0	0

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_132	5 - 9	+a-b	44	10.6	4.15	1.4	4.9	9.529	0	0

Legend