CisView Mouse (mm6, March 2005)

Overlap of ADD_LRH with other TFBS

No.TF2N overlapOverlap, %Overlap in
random seq., %
Abundance
of ADD_LRH
Abundance
of TF2
1ADD_GCNF
18971
34.03
23.6
55737
57792
2MIT_025SF1
7069
12.68
5.99
55737
37697
3MIT_038SF1
6512
11.68
5.62
55737
6547
4TF_RORA
4548
8.15
4.17
55737
49245
5TF_ARP1
4183
7.5
7.11
55737
48243
6TF_ER
2903
5.2
2.74
55737
48303

Over-represented distances with other TFBS

No.TF2Distance
Orienta-
sion
N pairsN backgr.
Ratio
Ratio
in random
Ratio
in repeats
Z
P
FDRDistribution
1ADD_TANTIGEN
20 - 24
+b+a
66
5.4
12.222
1.6
10.5
21.553
0
0
2ADD_CTCFC
110 - 114
+a-b
32
4.9
6.53
0.9
0.8
14.495
0
0
3MIT_108FAC1
70 - 74
+a+b
46
11.2
4.107
1
0.9
11.099
0
0
4MIT_037
10 - 14
+a-b
33
5.4
6.111
2.1
0.3
8.855
0
0
5MIT_129
115 - 119
-b+a
37
14.5
2.551
1.1
0.8
8.481
0
0
6TF_ETS
100 - 104
-b+a
96
44.7
2.147
1
0.8
7.636
0
0
7TF_E2F
15 - 19
-b+a
54
23.4
2.307
1
0.7
6.734
0
0
8MIT_094GFI
60 - 64
-b+a
43
19
2.263
1.1
0.8
5.182
0
0
9ADD_TTF1A
50 - 54
+b+a
43
20.3
2.118
1.3
0.6
5.083
0
0
10MIT_141HSF
35 - 39
+b+a
30
11.4
2.631
0.9
1.1
4.538
0
0.0001
11ADD_FXRIR1
25 - 29
+a-b
30
12.9
2.325
1.2
0.7
3.405
0.0066
0.0118
12MIT_046
135 - 139
-b+a
38
18.3
2.076
0.8
1.6
3.61
0.0165
0.0291

Repeat-based over-represented distances with other TFBS

No.TF2Distance
Orienta-
sion
N pairsN backgr.
Ratio
Ratio
in random
Ratio
in repeats
Z
P
FDRDistribution
1ADD_HOGNESS
45 - 49
+a+b
34
1.2
28.333
0
42.6
29.61
0
0
2ADD_FXRDR3
35 - 39
+b+a
62
21.3
2.91
1
103
7.334
0
0

Legend