Overlap of ADD_LXR2 with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_LXR2 with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_LXR2	Abundance of TF2
1	TF_RORA	3959	16.67	14.57	23741	49245
2	MIT_025SF1	3904	16.44	13.33	23741	37697
3	MIT_042	3670	15.45	10.72	23741	38889
4	TF_PAX2	2432	10.24	9.65	23741	48376
5	ADD_SF1B	2189	9.22	8.99	23741	48790
6	TF_MEISHOX	1736	7.31	5.47	23741	54810
7	TF_AP1	1562	6.57	5.28	23741	60342
8	ADD_GCNF	1559	6.56	4.75	23741	57792
9	TF_ER	1541	6.49	5.54	23741	48303
10	ADD_PIT	1511	6.36	3.78	23741	353844
11	TF_TGIF	1487	6.26	4.74	23741	52432
12	TF_ATF1	1476	6.21	10.57	23741	62873
13	TF_CREB	1433	6.03	10.16	23741	63477
14	TF_ATF6	1398	5.88	9.76	23741	58346
15	TF_HTF	1278	5.38	8.97	23741	57741

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_044OCT	10 - 14	+b+a	46	11.3	4.07	1.6	1.2	9.725	0	0
2	ADD_PAX8	60 - 64	-b+a	59	23.2	2.543	1.4	1.4	9.251	0	0
3	ADD_TTF1A	60 - 64	+b+a	33	9	3.666	1	0.6	8.164	0	0
4	TF_OCT	10 - 14	+b+a	100	40.5	2.469	1.2	1	7.697	0	0
5	TF_COMP	50 - 54	+b+a	49	19.4	2.525	0.8	0.5	7.373	0	0
6	ADD_MEF3	55 - 59	-b+a	53	20.7	2.56	1	0.6	6.982	0	0
7	TF_STAF	15 - 19	+a-b	54	23.8	2.268	1.1	1.1	6.721	0	0
8	TF_NFKB	110 - 114	+a+b	34	12.3	2.764	0.8	0.5	6.015	0	0
9	MIT_092	50 - 54	-b+a	39	18.1	2.154	1.1	0.8	5.245	0	0

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	TF_YY1	100 - 104	-b+a	37	15.9	2.327	0.9	7.7	5.982	0	0
2	TF_HLF	100 - 104	+b+a	45	19.2	2.343	1.3	6.4	5.858	0	0

Legend