Overlap of ADD_NANOG with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_NANOG with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_NANOG	Abundance of TF2
1	MIT_058IPF1	11269	25.88	23.34	43529	37776
2	TF_S8	6149	14.12	8.46	43529	87776
3	ADD_PIT	5585	12.83	6.92	43529	353844
4	TF_CART	5143	11.81	6.33	43529	105419
5	TF_HOXA5	4031	9.26	12.57	43529	43053
6	MIT_168	3771	8.66	5.9	43529	12416
7	ADD_HOXA4	3745	8.6	4.94	43529	18528
8	TF_CDP	3418	7.85	4.67	43529	70665
9	TF_HNF1	2978	6.84	4.52	43529	66746
10	TF_NFY	2865	6.58	4.18	43529	54933
11	TF_CHX	2838	6.51	4.24	43529	82243
12	TF_LHX	2796	6.42	3.58	43529	96236
13	TF_POU3F	2462	5.65	3.18	43529	78035
14	TF_FOXJ2	2241	5.14	3.59	43529	70049

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_019	135 - 139	+a+b	38	8.1	4.691	1.1	1.1	14.208	0	0
2	MIT_046	135 - 139	+a+b	38	10.8	3.518	1.1	1.5	10.475	0	0
3	TF_GABP	75 - 79	+b+a	65	26	2.5	0.9	0.8	7.401	0	0
4	MIT_131GATA	90 - 94	+a-b	35	15.4	2.272	1.1	0.7	5.094	0	0

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