CisView Mouse (mm6, March 2005)

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Overlap of ADD_SF1A with other TFBS

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_TTF1A	50 - 54	+b+a	30	3.8	7.894	2.3	1	12.886	0	0
2	TF_TGIF	10 - 14	+a-b	48	10.7	4.485	0.8	0.8	10.275	0	0
3	TF_COMP	45 - 49	+b+a	32	7.2	4.444	1.3	1.2	9.383	0	0
4	ADD_PAX8	55 - 59	-b+a	41	11.5	3.565	1.1	2.3	8.234	0	0
5	MIT_017IRF	15 - 19	+a+b	48	12	4	0.9	1.1	7.975	0	0
6	MIT_047NFY	15 - 19	+a-b	42	10.3	4.077	0.7	1.7	7.821	0	0
7	TF_ARP1	10 - 14	-b+a	30	9	3.333	1	0.4	7.37	0	0
8	TF_HFH	90 - 94	+b+a	30	8.3	3.614	0.9	3	7.281	0	0
9	TF_MEISHOX	10 - 14	+a+b	41	10.5	3.904	1	0.8	6.651	0	0
10	MIT_129	10 - 14	+a-b	36	5.7	6.315	0.6	1.7	6.328	0	0
11	ADD_MEF3	50 - 54	-b+a	35	10	3.5	1.2	0.7	6.16	0	0
12	TF_SREBP	80 - 84	+a-b	32	12.1	2.644	0.5	1	6.129	0	0
13	TF_STAF	25 - 29	+a-b	34	10.2	3.333	0.6	1.1	5.786	0	0
14	MIT_056PAX4	25 - 29	-b+a	35	11.9	2.941	1	0.8	5.671	0	0
15	TF_ER	35 - 39	+a+b	48	12.7	3.779	1.2	1.1	5.7	0	0
16	TF_AML	40 - 44	+a-b	32	13.7	2.335	0.9	2	4.096	0.0006	0.0012

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_TANTIGEN	20 - 24	+b+a	52	2.4	21.666	0	59.2	31.357	0	0
2	TF_STAT	25 - 29	+a-b	56	10	5.6	1	94.7	14.177	0	0
3	ADD_FXRDR3	35 - 39	+b+a	34	3.7	9.189	1.1	251.8	12.02	0	0
4	TF_LYF	30 - 34	+b+a	31	7.3	4.246	0.9	58.3	8.736	0	0
5	MIT_093PITX	40 - 44	-b+a	49	9.2	5.326	0.9	62.3	7.422	0	0
6	ADD_PITX	40 - 44	+a+b	49	9.1	5.384	0.9	62.7	7.42	0	0
7	TF_HSF	10 - 14	+b+a	31	8.8	3.522	0.8	6.1	6.911	0	0

Legend