Overlap of ADD_SF1B with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of ADD_SF1B with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of ADD_SF1B	Abundance of TF2
1	MIT_025SF1	20902	42.84	23.41	48790	37697
2	TF_RORA	12194	24.99	13.4	48790	49245
3	TF_ER	7847	16.08	9.01	48790	48303
4	TF_COUP	7183	14.72	7.95	48790	48497
5	TF_HNF4	3653	7.48	2.83	48790	56725
6	TF_PPAR	2492	5.1	1.73	48790	8111

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_152	85 - 89	-b+a	40	17.1	2.339	0.7	1.3	6.826	0	0
2	TF_MYC	90 - 94	+b+a	67	32.4	2.067	1	0.8	5.803	0	0
3	TF_MIF	35 - 39	+a+b	35	13.7	2.554	1.1	0.9	4.624	0	0.0001
4	TF_NFAT	30 - 34	+a+b	54	26.7	2.022	1.1	0.8	4.515	0	0.0001
5	MIT_107	70 - 74	+a-b	30	11.9	2.521	0.8	0.7	4.427	0.0002	0.0005
6	MIT_131GATA	30 - 34	+b+a	53	25.1	2.111	1	0.5	3.479	0.006	0.0108
7	MIT_094GFI	110 - 114	+a+b	31	14.6	2.123	1.2	1.2	3.462	0.0235	0.0409

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_025SF1	5 - 9	-b+a	220	98	2.244	1.1	6.7	5.676	0	0

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