Overlap of MIT_013LEF with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of MIT_013LEF with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of MIT_013LEF	Abundance of TF2
1	ADD_HMG	49440	52.46	41.48	94229	153281
2	ADD_SOX18	29297	31.09	23.85	94229	29857
3	TF_HNF4	16555	17.56	17.58	94229	56725
4	MIT_060FOXO	12556	13.32	8.4	94229	148519
5	TF_SRY	12532	13.29	8.56	94229	85717
6	ADD_SOX	9446	10.02	7.37	94229	9555
7	ADD_FOXJ1	8351	8.86	5.98	94229	85923
8	MIT_017IRF	5350	5.67	5.49	94229	81737

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_054MEF2	120 - 124	+a+b	40	10.8	3.703	0.8	1.4	9.197	0	0
2	MIT_019	125 - 129	+b+a	57	21.8	2.614	1.1	1.7	8.383	0	0
3	TF_BRACH	45 - 49	-b+a	54	20.8	2.596	1	1	6.705	0	0
4	MIT_052PIT	25 - 29	-b+a	42	18.2	2.307	1.2	0.5	4.877	0	0

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_HOGNESS	65 - 69	+a-b	80	2.3	34.782	0	68.8	64.607	0	0
2	NCBI_003	20 - 24	+a+b	62	2	31	0.8	338.7	53.918	0	0
3	ADD_TANTIGEN	40 - 44	+a-b	111	4.2	26.428	2.5	77.6	53.678	0	0
4	ADD_FXRDR3	15 - 19	-b+a	116	37.5	3.093	0.9	127	9.385	0	0
5	MIT_031	80 - 84	+a-b	50	19.2	2.604	0.9	56.8	9.261	0	0
6	ADD_PITX	60 - 64	+a-b	154	70	2.2	0.8	35.1	8.405	0	0
7	MIT_093PITX	60 - 64	+a+b	153	70.3	2.176	0.8	35	8.164	0	0

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