Overlap of MIT_035MYOD with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of MIT_035MYOD with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of MIT_035MYOD	Abundance of TF2
1	MIT_015AP4	8569	23.12	21.56	37060	60486
2	TF_MYOD	6799	18.34	19.28	37060	30217
3	TF_AP4	6788	18.31	19.05	37060	44815
4	TF_HEN1	6571	17.73	19.92	37060	40080
5	TF_E47	4897	13.21	12.96	37060	36341
6	TF_TAL1	4590	12.38	8.93	37060	49913
7	MIT_012MYOD	4144	11.18	11.67	37060	70740
8	TF_RP58	2744	7.4	5.8	37060	41479
9	MIT_101	2401	6.47	4.52	37060	41156
10	TF_RFX1	2274	6.13	4.97	37060	55971
11	TF_MEIS	2258	6.09	3.84	37060	79728
12	TF_RFX	2067	5.57	4.6	37060	54356
13	TF_TGIF	1985	5.35	3.18	37060	52432
14	MIT_041MEIS	1904	5.13	3.05	37060	39993

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	TF_SRF	40 - 44	-b+a	31	10.6	2.924	1	1.3	6.887	0	0

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	MIT_081	75 - 79	+a-b	45	11.7	3.846	1	98.2	12.607	0	0
2	MIT_010YY1	50 - 54	-b+a	33	4.1	8.048	0.8	82.5	9.685	0	0
3	MIT_072	80 - 84	+a+b	34	8.7	3.908	1	31.1	9.473	0	0
4	MIT_067TCF11	50 - 54	+a-b	45	13.8	3.26	1.1	47.9	7.957	0	0
5	TF_E2F	100 - 104	+a+b	44	14.3	3.076	1	93.4	7.141	0	0
6	MIT_041MEIS	85 - 89	+a-b	70	33.7	2.077	1.1	19.6	5.296	0	0

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