Overlap of TF_AML with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of TF_AML with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of TF_AML	Abundance of TF2
1	MIT_111AML	20134	29.28	24.63	68750	20563
2	TF_SREBP	5157	7.5	8.2	68750	54277
3	ADD_AIRE	5130	7.46	6.27	68750	45317
4	TF_MYC	3756	5.46	5.48	68750	35845

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	TF_MIF	30 - 34	+a+b	43	14.3	3.006	0.6	1.1	9.306	0	0
2	ADD_HOXA4	5 - 9	+a-b	71	26.4	2.689	1.2	0.7	8.044	0	0
3	MIT_009ATF	75 - 79	-b+a	40	12.5	3.2	1	0.8	7.924	0	0
4	MIT_149	15 - 19	-b+a	78	15.4	5.064	1	0.7	6.329	0	0
5	ADD_SF1A	40 - 44	+a-b	32	13.7	2.335	0.9	2	4.096	0.0006	0.0012

Repeat-based over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_TANTIGEN	35 - 39	+b+a	36	2.8	12.857	0	100.7	23.186	0	0
2	MIT_049SOX	85 - 89	-b+a	57	23.4	2.435	1.1	2.8	5.788	0	0

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