Overlap of TF_CDP with other TFBS and distance distribution

CisView Mouse (mm6, March 2005)

Overlap of TF_CDP with other TFBS

No.	TF2	N overlap	Overlap, %	Overlap in random seq., %	Abundance of TF_CDP	Abundance of TF2
1	TF_CLOX	49929	70.65	68.68	70665	74680
2	TF_PBX	16568	23.44	17.1	70665	76486
3	ADD_PIT	16102	22.78	19.88	70665	353844
4	TF_POU6F	8377	11.85	7.2	70665	70834
5	TF_S8	7841	11.09	6.17	70665	87776
6	ADD_HMG	6750	9.55	8.59	70665	153281
7	TF_CART	5944	8.41	4.23	70665	105419
8	TF_LHX	5205	7.36	3.43	70665	96236
9	TF_BRN	4913	6.95	5.29	70665	65768
10	MIT_097CDP	4239	5.99	4.31	70665	28886
11	TF_CHX	4122	5.83	2.74	70665	82243
12	TF_GATA	4035	5.71	4.24	70665	52711
13	TF_CDP	3785	5.35	0.84	70665	70665
14	MIT_023CHX	3620	5.12	2.09	70665	49452

Over-represented distances with other TFBS

No.	TF2	Distance	Orienta- sion	N pairs	N backgr.	Ratio	Ratio in random	Ratio in repeats	Z	P	FDR	Distribution
1	ADD_TTF1A	60 - 64	+a-b	52	18.1	2.872	1.1	0.6	7.443	0	0
2	MIT_043	105 - 109	-b+a	68	29.1	2.336	0.8	0.6	7.483	0	0
3	TF_E2F	45 - 49	+b+a	38	14.6	2.602	1	0.9	6.327	0	0
4	MIT_054MEF2	15 - 19	-b+a	62	22.7	2.731	0.8	1.6	5.441	0	0
5	TF_MIF	30 - 34	+a+b	36	14.6	2.465	0.9	1.1	5.434	0	0
6	MIT_108FAC1	45 - 49	-b+a	40	14.3	2.797	1.3	0.8	5.497	0	0
7	TF_RREB	55 - 59	+b+a	37	16.3	2.269	1.3	0.9	4.469	0.0001	0.0003

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