CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of ADD_HMG

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
ADD_HMG
ADD_HMG alone
In pair
with
1GO:0019222 regulation of metabolism
1541
at_TSS
116
yes
 
2GO:0031323 regulation of cellular metabolism
1510
at_TSS
115
yes
 
3GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
1420
at_TSS
108
yes
 
4GO:0006350 transcription
1461
at_TSS
108
yes
 
5GO:0045449 regulation of transcription
1410
at_TSS
108
yes
 
6GO:0007275 development
1378
at_TSS
107
yes
 
7GO:0006355 regulation of transcription, DNA-dependent
1362
at_TSS
105
yes
 
8GO:0006351 transcription, DNA-dependent
1383
at_TSS
105
yes
 
9GO:0048513 organ development
852
at_TSS,after_TSS
104
yes
 
10GO:0009653 morphogenesis
811
at_TSS,after_TSS
97
yes
 
11GO:0009887 organ morphogenesis
674
at_TSS,after_TSS
89
yes
 
12GO:0030528 transcription regulator activity
941
at_TSS
82
yes
 
13GO:0003700 transcription factor activity
719
at_TSS
69
yes
 
14GO:0000003 reproduction
171
after_TSS
65
yes
 
15GO:0005179 hormone activity
97
after_TSS
41
yes
 
16GO:0007399 nervous system development
301
at_TSS,after_TSS
40
yes
 
17GO:0007600 sensory perception
196
at_TSS
39
yes
 
18GO:0004857 enzyme inhibitor activity
155
at_TSS
36
yes
 
19GO:0007155 cell adhesion
395
at_TSS,after_TSS
36
yes
 
20GO:0004263 chymotrypsin activity
90
after_TSS
35
yes
 
21GO:0006334 nucleosome assembly
86
before_TSS
33
yes
 
22GO:0009790 embryonic development
170
before_TSS
32
yes
 
23GO:0007389 pattern specification
128
at_TSS,before_TSS,after_TSS
30
yes
 
24GO:0007156 homophilic cell adhesion
76
at_TSS,after_TSS
30
yes
 
25GO:0004866 endopeptidase inhibitor activity
112
at_TSS
28
yes
 
26GO:0030414 protease inhibitor activity
112
at_TSS
28
yes
 
27GO:0006959 humoral immune response
58
after_TSS
25
yes
 
28GO:0004867 serine-type endopeptidase inhibitor activity
77
at_TSS
20
yes
 
29GO:0001501 skeletal development
87
after_TSS
19
yes
 
30GO:0007417 central nervous system development
76
at_TSS,after_TSS
13
yes
 

Details on Gene Ontology terms for targets of ADD_HMG

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
yes
 
after_TSS
135
1749
7.7
5.1
1.5
5.303
0
0
GO:0005615
2none
 
yes
at_TSS
116
1541
7.5
4.6
1.62
5.823
0
0
GO:0019222 regulation of metabolism
3none
 
yes
at_TSS
115
1510
7.6
4.6
1.64
5.931
0
0
GO:0031323 regulation of cellular metabolism
4none
 
yes
at_TSS
108
1410
7.6
4.6
1.65
5.787
0
0
GO:0045449 regulation of transcription
5none
 
yes
at_TSS
108
1420
7.6
4.6
1.64
5.707
0
0
GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
6none
 
yes
at_TSS
108
1461
7.3
4.6
1.6
5.386
0
0
GO:0006350 transcription
7none
 
yes
at_TSS
107
1378
7.7
4.6
1.68
5.91
0
0
GO:0007275 development
8none
 
yes
at_TSS
105
1383
7.5
4.6
1.64
5.597
0
0
GO:0006351 transcription, DNA-dependent
9none
 
yes
at_TSS
105
1362
7.7
4.6
1.66
5.768
0
0
GO:0006355 regulation of transcription, DNA-dependent
10none
 
yes
after_TSS
104
852
12.2
7.9
1.53
4.765
0
0.0001
GO:0048513 organ development
11none
 
yes
after_TSS
97
811
11.9
7.9
1.5
4.372
0
0.0003
GO:0009653 morphogenesis
12none
 
yes
after_TSS
89
674
13.2
7.9
1.66
5.191
0
0
GO:0009887 organ morphogenesis
13none
 
yes
at_TSS
82
941
8.7
4.6
1.88
6.232
0
0
GO:0030528 transcription regulator activity
14none
 
yes
at_TSS
69
719
9.5
4.6
2.07
6.557
0
0
GO:0003700 transcription factor activity
15none
 
yes
at_TSS
69
852
8
4.6
1.75
5.019
0
0
GO:0048513 organ development
16none
 
yes
before_TSS
68
302
22.5
11.4
1.97
6.14
0
0
GO:0005667
17none
 
 
after_TSS
65
171
38
25.2
1.5
3.868
0.0001
0.0401
GO:0000003 reproduction
18none
 
yes
at_TSS
64
811
7.8
4.6
1.7
4.597
0
0
GO:0009653 morphogenesis
19none
 
yes
at_TSS
54
674
8
4.6
1.73
4.318
0
0.0001
GO:0009887 organ morphogenesis
20none
 
yes
after_TSS
43
302
14.2
7.9
1.79
4.092
0
0.0005
GO:0005667
21none
 
 
after_TSS
41
97
42.2
25.2
1.67
3.873
0.0001
0.0043
GO:0005179 hormone activity
22none
 
yes
after_TSS
40
301
13.2
7.9
1.67
3.468
0.0005
0.0101
GO:0007399 nervous system development
23none
 
 
at_TSS
39
196
19.8
12.7
1.55
3.003
0.0026
0.0652
GO:0007600 sensory perception
24none
yes
 
after_TSS
36
395
9.1
5.1
1.77
3.647
0.0002
0.0485
GO:0007155 cell adhesion
25none
 
 
at_TSS
36
155
23.2
12.7
1.81
3.915
0
0.0066
GO:0004857 enzyme inhibitor activity
26none
yes
 
before_TSS
35
88
39.7
25.5
1.55
3.064
0.0021
0.0532
GO:0005694
27none
 
 
after_TSS
35
90
38.8
25.2
1.54
2.989
0.0027
0.064
GO:0004263 chymotrypsin activity
28none
yes
 
before_TSS
33
86
38.3
25.5
1.5
2.73
0.0063
0.0927
GO:0006334 nucleosome assembly
29none
 
 
after_TSS
32
60
53.3
25.2
2.11
5.019
0
0
GO:0009897
30none
 
yes
before_TSS
32
170
18.8
11.4
1.64
3.057
0.0022
0.0327
GO:0009790 embryonic development
31none
 
yes
at_TSS
31
395
7.8
4.6
1.69
3.108
0.0018
0.0626
GO:0007155 cell adhesion
32none
 
 
after_TSS
30
76
39.4
25.2
1.56
2.863
0.0041
0.0959
GO:0007156 homophilic cell adhesion
33none
 
yes
before_TSS
30
128
23.4
11.4
2.05
4.298
0
0.0002
GO:0007389 pattern specification
34none
 
yes
at_TSS
28
302
9.2
4.6
2
3.901
0
0.0012
GO:0005667
35none
 
 
at_TSS
28
112
25
12.7
1.95
3.886
0.0001
0.0074
GO:0030414 protease inhibitor activity
36none
 
 
at_TSS
28
112
25
12.7
1.95
3.886
0.0001
0.0074
GO:0004866 endopeptidase inhibitor activity
37none
 
yes
at_TSS
27
301
8.9
4.6
1.94
3.642
0.0002
0.0052
GO:0007399 nervous system development
38none
 
 
after_TSS
25
58
43.1
25.2
1.7
3.137
0.0017
0.052
GO:0006959 humoral immune response
39none
 
yes
after_TSS
24
128
18.7
7.9
2.35
4.541
0
0.0001
GO:0007389 pattern specification
40none
 
 
at_TSS
21
76
27.6
12.7
2.16
3.886
0.0001
0.0093
GO:0007156 homophilic cell adhesion
41none
 
 
at_TSS
20
77
25.9
12.7
2.03
3.474
0.0005
0.0375
GO:0004867 serine-type endopeptidase inhibitor activity
42none
yes
yes
before_TSS
19
302
6.2
1.3
4.58
7.444
0
0
GO:0005667
43none
 
yes
after_TSS
19
87
21.8
7.9
2.74
4.806
0
0.0005
GO:0001501 skeletal development
44none
 
yes
at_TSS
17
181
9.3
4.6
2.03
3.082
0.002
0.0836
GO:0005578
45none
 
yes
at_TSS
16
128
12.5
4.6
2.7
4.27
0
0.0007
GO:0007389 pattern specification
46none
yes
 
after_TSS
14
97
14.4
5.1
2.81
4.168
0
0.0018
GO:0005179 hormone activity
47none
 
yes
after_TSS
13
76
17.1
7.9
2.15
2.96
0.003
0.0703
GO:0007417 central nervous system development
48none
yes
 
after_TSS
10
76
13.1
5.1
2.56
3.181
0.0014
0.0767
GO:0007156 homophilic cell adhesion
49none
 
yes
at_TSS
10
76
13.1
4.6
2.84
3.557
0.0003
0.0274
GO:0007417 central nervous system development