CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of ADD_HOGNESS

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
ADD_HOGNESS
ADD_HOGNESS alone
In pair
with
1GO:0016070 RNA metabolism
342
before_TSS
60
yes
 
2GO:0003723 RNA binding
354
before_TSS
55
yes
 
3GO:0006396 RNA processing
273
before_TSS
53
yes
 
4GO:0016071 mRNA metabolism
202
before_TSS
40
yes
 
5GO:0006397 mRNA processing
189
before_TSS
37
yes
 
6GO:0000398 nuclear mRNA splicing, via spliceosome
149
before_TSS
31
yes
 
7GO:0008380 RNA splicing
154
before_TSS
31
yes
 
8GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
149
before_TSS
31
yes
 
9GO:0000375 RNA splicing, via transesterification reactions
149
before_TSS
31
yes
 
10GO:0003735 structural constituent of ribosome
172
before_TSS
30
yes
 
11GO:0004386 helicase activity
108
before_TSS
23
yes
 
12GO:0008026 ATP-dependent helicase activity
86
before_TSS
19
yes
 
13GO:0042254 ribosome biogenesis and assembly
74
before_TSS
18
yes
 
14GO:0007028 cytoplasm organization and biogenesis
82
before_TSS
18
yes
 
15GO:0006913 nucleocytoplasmic transport
70
before_TSS
15
yes
 
16GO:0007046 ribosome biogenesis
67
before_TSS
15
yes
 
17GO:0051169 nuclear transport
63
before_TSS
14
yes
 

Details on Gene Ontology terms for targets of ADD_HOGNESS

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
before_TSS
83
613
13.5
8.3
1.62
4.772
0
0.0006
GO:0005622
2none
 
 
before_TSS
60
342
17.5
8.3
2.1
6.239
0
0
GO:0016070 RNA metabolism
3none
 
 
before_TSS
55
354
15.5
8.3
1.86
4.965
0
0
GO:0003723 RNA binding
4none
 
 
before_TSS
53
273
19.4
8.3
2.32
6.688
0
0
GO:0006396 RNA processing
5none
 
 
before_TSS
40
202
19.8
8.3
2.37
5.937
0
0
GO:0016071 mRNA metabolism
6none
 
 
before_TSS
37
189
19.5
8.3
2.34
5.627
0
0
GO:0006397 mRNA processing
7none
 
 
before_TSS
31
149
20.8
8.3
2.49
5.533
0
0
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
8none
 
 
before_TSS
31
149
20.8
8.3
2.49
5.533
0
0
GO:0000375 RNA splicing, via transesterification reactions
9none
 
 
before_TSS
31
149
20.8
8.3
2.49
5.533
0
0
GO:0000398 nuclear mRNA splicing, via spliceosome
10none
 
 
before_TSS
31
154
20.1
8.3
2.41
5.321
0
0
GO:0008380 RNA splicing
11none
 
 
before_TSS
30
183
16.3
8.3
1.96
3.966
0
0.0053
GO:0030529
12none
 
 
before_TSS
30
172
17.4
8.3
2.09
4.344
0
0.0017
GO:0003735 structural constituent of ribosome
13none
 
 
before_TSS
25
136
18.3
8.3
2.2
4.256
0
0.0025
GO:0005840
14none
 
 
before_TSS
23
108
21.2
8.3
2.55
4.888
0
0.0003
GO:0004386 helicase activity
15none
 
 
before_TSS
19
86
22
8.3
2.64
4.626
0
0.0013
GO:0008026 ATP-dependent helicase activity
16none
 
 
before_TSS
18
82
21.9
8.3
2.63
4.47
0
0.0028
GO:0007028 cytoplasm organization and biogenesis
17none
 
 
before_TSS
18
74
24.3
8.3
2.91
4.985
0
0.0002
GO:0042254 ribosome biogenesis and assembly
18none
 
 
before_TSS
15
67
22.3
8.3
2.68
4.167
0
0.0112
GO:0007046 ribosome biogenesis
19none
 
 
before_TSS
15
70
21.4
8.3
2.56
3.969
0
0.0088
GO:0006913 nucleocytoplasmic transport
20none
 
 
before_TSS
14
63
22.2
8.3
2.66
3.992
0
0.0119
GO:0051169 nuclear transport
21none
 
 
before_TSS
13
54
24
8.3
2.88
4.188
0
0.0051
GO:0005681