CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of ADD_NANOG

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
ADD_NANOG
ADD_NANOG alone
In pair
with
1GO:0050791 regulation of physiological process
2046
before_TSS
110
yes
 
2GO:0050794 regulation of cellular process
2068
before_TSS
108
yes
 
3GO:0051244 regulation of cellular physiological process
1986
before_TSS
107
yes
 
4GO:0019222 regulation of metabolism
1541
before_TSS
85
yes
 
5GO:0003677 DNA binding
1509
before_TSS
83
yes
 
6GO:0006350 transcription
1461
before_TSS
83
yes
 
7GO:0031323 regulation of cellular metabolism
1510
before_TSS
83
yes
 
8GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
1420
before_TSS
81
yes
 
9GO:0007275 development
1378
before_TSS
81
yes
 
10GO:0045449 regulation of transcription
1410
before_TSS
81
yes
 
11GO:0006355 regulation of transcription, DNA-dependent
1362
before_TSS
77
yes
 
12GO:0006351 transcription, DNA-dependent
1383
before_TSS
77
yes
 
13GO:0009605 response to external stimulus
489
after_TSS
63
yes
 
14GO:0030528 transcription regulator activity
941
before_TSS
62
yes
 
15GO:0009653 morphogenesis
811
before_TSS
53
yes
 
16GO:0003700 transcription factor activity
719
before_TSS,after_TSS
52
yes
 
17GO:0048513 organ development
852
before_TSS
51
yes
 
18GO:0009887 organ morphogenesis
674
before_TSS
45
yes
 
19GO:0043207 response to external biotic stimulus
237
after_TSS
31
yes
 
20GO:0007600 sensory perception
196
at_TSS,after_TSS
29
yes
 
21GO:0030154 cell differentiation
538
before_TSS
29
yes
 
22GO:0007399 nervous system development
301
before_TSS
18
yes
 
23GO:0051276 chromosome organization and biogenesis
220
before_TSS
17
 
MIT_013LEF,
24GO:0007156 homophilic cell adhesion
76
after_TSS
14
yes
 
25GO:0009790 embryonic development
170
before_TSS
14
yes
 
26GO:0006974 response to DNA damage stimulus
156
before_TSS
13
 
TF_GATA,
27GO:0009719 response to endogenous stimulus
159
before_TSS
13
 
TF_GATA,
28GO:0007389 pattern specification
128
before_TSS
13
yes
 
29GO:0000398 nuclear mRNA splicing, via spliceosome
149
before_TSS
12
 
TF_ARNT,
30GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
149
before_TSS
12
 
TF_ARNT,
31GO:0000375 RNA splicing, via transesterification reactions
149
before_TSS
12
 
TF_ARNT,
32GO:0006281 DNA repair
133
before_TSS
11
 
TF_GATA,
33GO:0030182 neuron differentiation
137
before_TSS
11
yes
 
34GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
68
before_TSS
10
 
MIT_013LEF,
35GO:0009792 embryonic development (sensu Metazoa)
85
before_TSS
10
yes
 

Pairs of ADD_NANOG binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_ARNT
before_TSS
3
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
12
149
2TF_GATA
before_TSS
3
GO:0009719 response to endogenous stimulus
13
159
3MIT_013LEF
before_TSS
2
GO:0051276 chromosome organization and biogenesis
17
220

Details on Gene Ontology terms for targets of ADD_NANOG

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
110
2046
5.3
3.4
1.54
5.139
0
0
GO:0050791 regulation of physiological process
2none
 
yes
before_TSS
108
2068
5.2
3.4
1.5
4.753
0
0
GO:0050794 regulation of cellular process
3none
 
yes
before_TSS
107
1986
5.3
3.4
1.54
5.078
0
0
GO:0051244 regulation of cellular physiological process
4none
 
yes
before_TSS
85
1541
5.5
3.4
1.58
4.672
0
0
GO:0019222 regulation of metabolism
5none
 
yes
before_TSS
83
1510
5.4
3.4
1.58
4.574
0
0
GO:0031323 regulation of cellular metabolism
6none
 
yes
before_TSS
83
1509
5.5
3.4
1.58
4.581
0
0
GO:0003677 DNA binding
7none
 
yes
before_TSS
83
1461
5.6
3.4
1.63
4.899
0
0
GO:0006350 transcription
8none
 
yes
before_TSS
81
1378
5.8
3.4
1.68
5.164
0
0
GO:0007275 development
9none
 
yes
before_TSS
81
1420
5.7
3.4
1.63
4.871
0
0
GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
10none
 
yes
before_TSS
81
1410
5.7
3.4
1.65
4.94
0
0
GO:0045449 regulation of transcription
11none
 
yes
before_TSS
77
1383
5.5
3.4
1.6
4.505
0
0
GO:0006351 transcription, DNA-dependent
12none
 
yes
before_TSS
77
1362
5.6
3.4
1.62
4.649
0
0
GO:0006355 regulation of transcription, DNA-dependent
13none
 
 
after_TSS
63
489
12.8
8.3
1.53
3.679
0.0002
0.0023
GO:0009605 response to external stimulus
14none
 
yes
before_TSS
62
941
6.5
3.4
1.89
5.421
0
0
GO:0030528 transcription regulator activity
15none
 
yes
before_TSS
53
811
6.5
3.4
1.87
4.918
0
0
GO:0009653 morphogenesis
16none
 
yes
before_TSS
52
719
7.2
3.4
2.07
5.663
0
0
GO:0003700 transcription factor activity
17none
 
yes
before_TSS
51
852
5.9
3.4
1.72
4.142
0
0.0003
GO:0048513 organ development
18none
 
 
after_TSS
47
356
13.2
8.3
1.57
3.341
0.0008
0.0082
GO:0005576
19none
 
yes
before_TSS
45
674
6.6
3.4
1.91
4.662
0
0
GO:0009887 organ morphogenesis
20none
 
yes
after_TSS
36
719
5
2.2
2.24
5.196
0
0
GO:0003700 transcription factor activity
21none
 
yes
before_TSS
32
302
10.5
3.4
3.04
6.835
0
0
GO:0005667
22none
 
 
after_TSS
31
237
13
8.3
1.56
2.644
0.0081
0.0545
GO:0043207 response to external biotic stimulus
23none
 
yes
before_TSS
29
538
5.3
3.4
1.54
2.475
0.0133
0.0677
GO:0030154 cell differentiation
24none
 
 
after_TSS
29
196
14.7
8.3
1.76
3.275
0.001
0.0297
GO:0007600 sensory perception
25none
 
yes
before_TSS
18
301
5.9
3.4
1.71
2.398
0.0164
0.0701
GO:0007399 nervous system development
26none
 
 
at_TSS
17
196
8.6
4.3
1.99
2.987
0.0028
0.0606
GO:0007600 sensory perception
27none
 
yes
at_TSS
16
302
5.2
1.4
3.7
5.735
0
0
GO:0005667
28none
 
 
after_TSS
14
76
18.4
8.3
2.2
3.173
0.0015
0.069
GO:0007156 homophilic cell adhesion
29none
 
yes
before_TSS
14
170
8.2
3.4
2.36
3.408
0.0006
0.0133
GO:0009790 embryonic development
30none
 
yes
before_TSS
13
128
10.1
3.4
2.91
4.144
0
0.0004
GO:0007389 pattern specification
31none
 
yes
before_TSS
11
137
8
3.4
2.3
2.923
0.0034
0.0373
GO:0030182 neuron differentiation
32none
 
yes
before_TSS
10
85
11.7
3.4
3.38
4.183
0
0.0052
GO:0009792 embryonic development (sensu Metazoa)
33MIT_013LEF
 
 
before_TSS
17
220
7.7
3.2
2.34
3.714
0.0002
0.0855
GO:0051276 chromosome organization and biogenesis
34MIT_013LEF
 
 
before_TSS
10
68
14.7
3.2
4.46
5.283
0
0.0054
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
35MIT_029
 
 
before_TSS
11
136
8
2.3
3.5
4.519
0
0.0671
GO:0005840
36TF_ARNT
 
 
before_TSS
12
149
8
2.6
3
4.091
0
0.0976
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
37TF_ARNT
 
 
before_TSS
12
149
8
2.6
3
4.091
0
0.0976
GO:0000398 nuclear mRNA splicing, via spliceosome
38TF_ARNT
 
 
before_TSS
12
149
8
2.6
3
4.091
0
0.0976
GO:0000375 RNA splicing, via transesterification reactions
39TF_GATA
 
 
before_TSS
13
156
8.3
1.7
4.69
6.239
0
0
GO:0006974 response to DNA damage stimulus
40TF_GATA
 
 
before_TSS
13
159
8.1
1.7
4.6
6.149
0
0
GO:0009719 response to endogenous stimulus
41TF_GATA
 
 
before_TSS
11
133
8.2
1.7
4.65
5.701
0
0.0005
GO:0006281 DNA repair