CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of ADD_NCX

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
ADD_NCX
ADD_NCX alone
In pair
with
1GO:0030528 transcription regulator activity
941
before_TSS
73
yes
 
2GO:0043207 response to external biotic stimulus
237
after_TSS
66
yes
 
3GO:0009887 organ morphogenesis
674
before_TSS,after_TSS
64
yes
 
4GO:0009613 response to pest, pathogen or parasite
221
after_TSS
64
yes
 
5GO:0003700 transcription factor activity
719
at_TSS,before_TSS
57
yes
 
6GO:0003735 structural constituent of ribosome
172
after_TSS
46
yes
 
7GO:0006333 chromatin assembly or disassembly
121
after_TSS
34
yes
 
8GO:0006461 protein complex assembly
123
after_TSS
33
yes
 
9GO:0007399 nervous system development
301
before_TSS,after_TSS
31
yes
 
10GO:0031497 chromatin assembly
95
after_TSS
30
yes
 
11GO:0006334 nucleosome assembly
86
before_TSS,after_TSS
28
yes
 
12GO:0006959 humoral immune response
58
after_TSS
24
yes
 
13GO:0051276 chromosome organization and biogenesis
220
before_TSS
19
yes
 
14GO:0048468 cell development
162
after_TSS
19
yes
 
15GO:0016064 humoral defense mechanism (sensu Vertebrata)
39
after_TSS
18
yes
 
16GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
before_TSS
18
yes
 
17GO:0006323 DNA packaging
188
before_TSS
17
yes
 
18GO:0006325 establishment and/or maintenance of chromatin architecture
179
before_TSS
16
yes
 
19GO:0048666 neuron development
108
after_TSS
14
yes
 
20GO:0007409 axonogenesis
81
after_TSS
13
yes
 
21GO:0016055 Wnt receptor signaling pathway
81
after_TSS
13
yes
 
22GO:0006956 complement activation
28
after_TSS
12
yes
 
23GO:0007417 central nervous system development
76
before_TSS,after_TSS
11
yes
 

Details on Gene Ontology terms for targets of ADD_NCX

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
73
941
7.7
4.6
1.67
4.743
0
0
GO:0030528 transcription regulator activity
2none
 
 
after_TSS
66
237
27.8
17.3
1.6
4.334
0
0.0007
GO:0043207 response to external biotic stimulus
3none
 
 
after_TSS
64
221
28.9
17.3
1.67
4.623
0
0.0006
GO:0009613 response to pest, pathogen or parasite
4none
 
yes
after_TSS
64
674
9.4
6.2
1.53
3.643
0.0002
0.0035
GO:0009887 organ morphogenesis
5none
 
yes
before_TSS
57
719
7.9
4.6
1.71
4.329
0
0.0001
GO:0003700 transcription factor activity
6none
 
yes
before_TSS
47
674
6.9
4.6
1.5
2.97
0.0029
0.0108
GO:0009887 organ morphogenesis
7none
 
 
after_TSS
46
172
26.7
17.3
1.54
3.297
0.0009
0.0447
GO:0003735 structural constituent of ribosome
8none
 
yes
at_TSS
36
719
5
2.6
1.89
4.092
0
0.0003
GO:0003700 transcription factor activity
9none
 
 
after_TSS
34
121
28
17.3
1.62
3.155
0.0016
0.0255
GO:0006333 chromatin assembly or disassembly
10none
 
 
after_TSS
33
123
26.8
17.3
1.55
2.807
0.005
0.0677
GO:0006461 protein complex assembly
11none
 
yes
after_TSS
31
301
10.2
6.2
1.65
2.981
0.0028
0.035
GO:0007399 nervous system development
12none
 
 
after_TSS
30
95
31.5
17.3
1.82
3.693
0.0002
0.0035
GO:0031497 chromatin assembly
13none
 
yes
before_TSS
28
301
9.3
4.6
2
3.899
0
0.0013
GO:0007399 nervous system development
14none
 
 
after_TSS
28
86
32.5
17.3
1.88
3.753
0.0001
0.0027
GO:0006334 nucleosome assembly
15none
 
 
after_TSS
27
78
34.6
17.3
2
4.055
0
0.0008
GO:0000786
16none
 
 
after_TSS
24
58
41.3
17.3
2.39
4.859
0
0.0002
GO:0006959 humoral immune response
17none
 
yes
before_TSS
23
302
7.6
4.6
1.64
2.494
0.0126
0.0424
GO:0005667
18none
 
 
after_TSS
19
60
31.6
17.3
1.83
2.948
0.0031
0.078
GO:0009897
19none
 
yes
after_TSS
19
162
11.7
6.2
1.89
2.933
0.0033
0.0877
GO:0048468 cell development
20none
 
yes
before_TSS
19
220
8.6
4.6
1.86
2.848
0.0043
0.067
GO:0051276 chromosome organization and biogenesis
21none
 
 
after_TSS
18
39
46.1
17.3
2.66
4.77
0
0.0006
GO:0016064 humoral defense mechanism (sensu Vertebrata)
22none
 
yes
before_TSS
18
208
8.6
4.6
1.86
2.78
0.0054
0.0765
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
23none
 
yes
before_TSS
17
188
9
4.6
1.95
2.896
0.0037
0.0532
GO:0006323 DNA packaging
24none
 
yes
at_TSS
16
302
5.2
2.6
2.01
2.924
0.0034
0.0229
GO:0005667
25none
 
yes
before_TSS
16
179
8.9
4.6
1.92
2.758
0.0058
0.0851
GO:0006325 establishment and/or maintenance of chromatin architecture
26none
 
yes
after_TSS
14
108
12.9
6.2
2.08
2.924
0.0034
0.0665
GO:0048666 neuron development
27none
 
yes
after_TSS
13
81
16
6.2
2.58
3.684
0.0002
0.028
GO:0016055 Wnt receptor signaling pathway
28none
 
yes
after_TSS
13
81
16
6.2
2.58
3.684
0.0002
0.021
GO:0007409 axonogenesis
29none
 
 
after_TSS
12
28
42.8
17.3
2.47
3.578
0.0003
0.0316
GO:0006956 complement activation
30none
 
yes
after_TSS
12
88
13.6
6.2
2.19
2.9
0.0037
0.091
GO:0005694
31none
 
yes
after_TSS
11
76
14.4
6.2
2.33
2.997
0.0027
0.0767
GO:0007417 central nervous system development
32none
 
yes
before_TSS
10
76
13.1
4.6
2.83
3.544
0.0003
0.006
GO:0007417 central nervous system development
33none
 
yes
before_TSS
10
78
12.8
4.6
2.76
3.449
0.0005
0.0187
GO:0000786
34none
 
yes
before_TSS
10
86
11.6
4.6
2.5
3.095
0.0019
0.0554
GO:0006334 nucleosome assembly