CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of MIT_064AP1

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
MIT_064AP1
MIT_064AP1 alone
In pair
with
1GO:0050896 response to stimulus
1020
at_TSS
79
yes
 
2GO:0009605 response to external stimulus
489
at_TSS,after_TSS
68
yes
 
3GO:0005102 receptor binding
406
at_TSS,after_TSS
60
yes
 
4GO:0048513 organ development
852
before_TSS
59
yes
 
5GO:0009653 morphogenesis
811
before_TSS
59
yes
 
6GO:0009887 organ morphogenesis
674
before_TSS
49
yes
 
7GO:0009607 response to biotic stimulus
483
at_TSS
43
yes
 
8GO:0006952 defense response
463
at_TSS
41
yes
 
9GO:0030154 cell differentiation
538
before_TSS
36
yes
 
10GO:0043207 response to external biotic stimulus
237
at_TSS,after_TSS
35
yes
 
11GO:0006955 immune response
379
at_TSS
34
yes
 
12GO:0009613 response to pest, pathogen or parasite
221
at_TSS,after_TSS
31
yes
 
13GO:0007399 nervous system development
301
before_TSS
28
yes
 
14GO:0046483 heterocycle metabolism
53
before_TSS
27
yes
 
15GO:0030246 carbohydrate binding
208
at_TSS
22
yes
 
16GO:0004497 monooxygenase activity
90
after_TSS
22
yes
 
17GO:0007600 sensory perception
196
at_TSS
20
yes
 
18GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
after_TSS
20
yes
 
19GO:0005529 sugar binding
144
at_TSS
20
yes
 
20GO:0005179 hormone activity
97
at_TSS,before_TSS,after_TSS
19
yes
TF_LHX, TF_GFI,
21GO:0007610 behavior
229
before_TSS
19
yes
 
22GO:0004866 endopeptidase inhibitor activity
112
after_TSS
18
yes
 
23GO:0030414 protease inhibitor activity
112
after_TSS
18
yes
 
24GO:0004263 chymotrypsin activity
90
after_TSS
18
yes
 
25GO:0050877 neurophysiological process
312
at_TSS
17
yes
 
26GO:0005125 cytokine activity
173
at_TSS
17
yes
 
27GO:0007626 locomotory behavior
187
before_TSS
17
yes
 
28GO:0006928 cell motility
162
before_TSS
15
yes
 
29GO:0040011 locomotion
165
before_TSS
15
yes
 
30GO:0009790 embryonic development
170
before_TSS
15
yes
 
31GO:0006954 inflammatory response
101
at_TSS
13
yes
 
32GO:0016789 carboxylic ester hydrolase activity
80
at_TSS
12
yes
 
33GO:0016337 cell-cell adhesion
99
before_TSS
12
 
TF_BRN,
34GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
85
at_TSS
11
yes
 
35GO:0008236 serine-type peptidase activity
158
before_TSS
10
 
MIT_139FOXJ1,
36GO:0001501 skeletal development
87
before_TSS
10
yes
 
37GO:0007156 homophilic cell adhesion
76
at_TSS,before_TSS
10
yes
TF_BRN,

Pairs of MIT_064AP1 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_BRN
before_TSS
2
GO:0016337 cell-cell adhesion
12
99
2MIT_139FOXJ1
before_TSS
1
GO:0008236 serine-type peptidase activity
10
158
3TF_LHX
before_TSS
1
GO:0005179 hormone activity
13
97
4TF_GFI
before_TSS
1
GO:0005179 hormone activity
12
97

Details on Gene Ontology terms for targets of MIT_064AP1

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
79
1020
7.7
5
1.54
4.189
0
0.0007
GO:0050896 response to stimulus
2none
 
 
after_TSS
68
489
13.9
8.9
1.55
3.912
0
0.0011
GO:0009605 response to external stimulus
3none
 
 
after_TSS
60
406
14.7
8.9
1.65
4.178
0
0.0107
GO:0005102 receptor binding
4none
 
yes
before_TSS
59
852
6.9
4.4
1.55
3.627
0.0002
0.0016
GO:0048513 organ development
5none
 
yes
before_TSS
59
811
7.2
4.4
1.63
4.032
0
0.0003
GO:0009653 morphogenesis
6none
 
 
after_TSS
57
356
16
8.9
1.78
4.731
0
0
GO:0005576
7none
 
yes
before_TSS
49
674
7.2
4.4
1.63
3.647
0.0002
0.0015
GO:0009887 organ morphogenesis
8none
 
 
at_TSS
45
489
9.2
5
1.83
4.342
0
0.0003
GO:0009605 response to external stimulus
9none
 
 
at_TSS
43
483
8.9
5
1.77
4.006
0
0.0009
GO:0009607 response to biotic stimulus
10none
 
 
at_TSS
41
463
8.8
5
1.76
3.871
0.0001
0.0014
GO:0006952 defense response
11none
 
 
at_TSS
38
406
9.3
5
1.86
4.09
0
0.0031
GO:0005102 receptor binding
12none
 
 
at_TSS
38
356
10.6
5
2.13
4.976
0
0
GO:0005576
13none
 
yes
before_TSS
36
538
6.6
4.4
1.5
2.574
0.01
0.0593
GO:0030154 cell differentiation
14none
 
 
after_TSS
35
237
14.7
8.9
1.64
3.164
0.0015
0.0189
GO:0043207 response to external biotic stimulus
15none
 
 
at_TSS
34
379
8.9
5
1.79
3.595
0.0003
0.0043
GO:0006955 immune response
16none
 
 
after_TSS
31
221
14
8.9
1.56
2.664
0.0077
0.0601
GO:0009613 response to pest, pathogen or parasite
17none
 
yes
before_TSS
28
301
9.3
4.4
2.08
4.129
0
0.0006
GO:0007399 nervous system development
18none
 
 
before_TSS
27
53
50.9
28.1
1.8
3.69
0.0002
0.082
GO:0046483 heterocycle metabolism
19none
 
 
at_TSS
27
237
11.3
5
2.27
4.551
0
0.0001
GO:0043207 response to external biotic stimulus
20none
 
 
at_TSS
23
221
10.4
5
2.07
3.714
0.0002
0.0037
GO:0009613 response to pest, pathogen or parasite
21none
 
 
after_TSS
22
97
22.6
8.9
2.53
4.752
0
0.0007
GO:0005792
22none
 
 
at_TSS
22
208
10.5
5
2.11
3.715
0.0002
0.0123
GO:0030246 carbohydrate binding
23none
 
 
after_TSS
22
90
24.4
8.9
2.72
5.164
0
0
GO:0004497 monooxygenase activity
24none
 
 
after_TSS
20
91
21.9
8.9
2.45
4.366
0
0.0023
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
25none
 
 
at_TSS
20
144
13.8
5
2.77
4.916
0
0.0003
GO:0005529 sugar binding
26none
 
 
at_TSS
20
196
10.2
5
2.03
3.363
0.0007
0.0235
GO:0007600 sensory perception
27none
 
yes
before_TSS
19
229
8.2
4.4
1.86
2.846
0.0044
0.0522
GO:0007610 behavior
28none
 
 
after_TSS
19
97
19.5
8.9
2.18
3.681
0.0002
0.0056
GO:0005179 hormone activity
29none
 
 
after_TSS
18
112
16
8.9
1.79
2.649
0.008
0.0984
GO:0030414 protease inhibitor activity
30none
 
 
after_TSS
18
90
20
8.9
2.23
3.682
0.0002
0.0423
GO:0004263 chymotrypsin activity
31none
 
 
after_TSS
18
112
16
8.9
1.79
2.649
0.008
0.0984
GO:0004866 endopeptidase inhibitor activity
32none
 
 
at_TSS
17
173
9.8
5
1.96
2.927
0.0034
0.0835
GO:0005125 cytokine activity
33none
 
yes
before_TSS
17
187
9
4.4
2.04
3.098
0.0019
0.0375
GO:0007626 locomotory behavior
34none
 
yes
at_TSS
17
312
5.4
1.8
2.93
4.755
0
0.0007
GO:0050877 neurophysiological process
35none
 
yes
before_TSS
15
162
9.2
4.4
2.07
2.985
0.0028
0.0451
GO:0006928 cell motility
36none
 
yes
before_TSS
15
165
9
4.4
2.04
2.907
0.0036
0.0534
GO:0040011 locomotion
37none
 
yes
before_TSS
15
170
8.8
4.4
1.98
2.781
0.0054
0.0639
GO:0009790 embryonic development
38none
 
 
after_TSS
14
60
23.3
8.9
2.6
3.909
0
0.0037
GO:0009897
39none
 
 
at_TSS
13
97
13.4
5
2.67
3.806
0.0001
0.0073
GO:0005179 hormone activity
40none
 
 
at_TSS
13
101
12.8
5
2.57
3.639
0.0002
0.0125
GO:0006954 inflammatory response
41none
 
 
at_TSS
12
80
15
5
2.99
4.111
0
0.0144
GO:0016789 carboxylic ester hydrolase activity
42none
 
 
at_TSS
11
85
12.9
5
2.58
3.365
0.0007
0.056
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
43none
 
yes
before_TSS
10
87
11.4
4.4
2.58
3.195
0.0013
0.0465
GO:0001501 skeletal development
44none
 
 
at_TSS
10
76
13.1
5
2.62
3.268
0.001
0.066
GO:0007156 homophilic cell adhesion
45MIT_139FOXJ1
 
 
before_TSS
10
158
6.3
1.6
3.88
4.7
0
0.0374
GO:0008236 serine-type peptidase activity
46TF_BRN
 
 
before_TSS
12
99
12.1
3.4
3.55
4.792
0
0.0356
GO:0016337 cell-cell adhesion
47TF_BRN
 
 
before_TSS
10
76
13.1
3.4
3.85
4.694
0
0.0385
GO:0007156 homophilic cell adhesion
48TF_GFI
 
 
before_TSS
12
97
12.3
3
4.1
5.409
0
0.0009
GO:0005179 hormone activity
49TF_LHX
 
 
before_TSS
13
97
13.4
3.9
3.42
4.844
0
0.0137
GO:0005179 hormone activity
50TF_MZF
 
 
before_TSS
21
356
5.8
2.1
2.75
4.974
0
0.0094
GO:0005576