CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of MIT_124

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
MIT_124
MIT_124 alone
In pair
with
1GO:0006259 DNA metabolism
427
at_TSS
23
yes
 
2GO:0016070 RNA metabolism
342
at_TSS
18
yes
 
3GO:0051276 chromosome organization and biogenesis
220
at_TSS
15
yes
TF_NFY,
4GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
at_TSS
14
yes
TF_NFY,
5GO:0006974 response to DNA damage stimulus
156
at_TSS
12
yes
 
6GO:0009719 response to endogenous stimulus
159
at_TSS
12
yes
 
7GO:0006325 establishment and/or maintenance of chromatin architecture
179
at_TSS
12
yes
 
8GO:0006323 DNA packaging
188
at_TSS
12
yes
 
9GO:0006281 DNA repair
133
at_TSS
11
yes
 
10GO:0006333 chromatin assembly or disassembly
121
at_TSS
11
yes
 
11GO:0000279 M phase
122
at_TSS
11
yes
 
12GO:0008135 translation factor activity, nucleic acid binding
86
after_TSS
10
yes
 
13GO:0031497 chromatin assembly
95
at_TSS
10
yes
 
14GO:0043037 translation
128
at_TSS
10
yes
 
15GO:0045182 translation regulator activity
90
after_TSS
10
yes
 

Pairs of MIT_124 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_NFY
at_TSS
2
GO:0051276 chromosome organization and biogenesis
12
220

Details on Gene Ontology terms for targets of MIT_124

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
23
427
5.3
2.8
1.89
3.22
0.0012
0.0187
GO:0006259 DNA metabolism
2none
 
 
at_TSS
19
322
5.9
2.8
2.07
3.347
0.0008
0.0747
GO:0005783
3none
 
 
at_TSS
18
342
5.2
2.8
1.85
2.732
0.0062
0.0622
GO:0016070 RNA metabolism
4none
 
 
at_TSS
15
220
6.8
2.8
2.39
3.581
0.0003
0.0073
GO:0051276 chromosome organization and biogenesis
5none
 
 
at_TSS
14
208
6.7
2.8
2.36
3.403
0.0006
0.0121
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
6none
 
 
at_TSS
12
156
7.6
2.8
2.7
3.668
0.0002
0.0089
GO:0006974 response to DNA damage stimulus
7none
 
 
at_TSS
12
159
7.5
2.8
2.65
3.593
0.0003
0.0119
GO:0009719 response to endogenous stimulus
8none
 
 
at_TSS
12
179
6.7
2.8
2.35
3.132
0.0017
0.0334
GO:0006325 establishment and/or maintenance of chromatin architecture
9none
 
 
at_TSS
12
188
6.3
2.8
2.24
2.944
0.0032
0.0592
GO:0006323 DNA packaging
10none
 
 
at_TSS
11
121
9
2.8
3.19
4.156
0
0.0006
GO:0006333 chromatin assembly or disassembly
11none
 
 
at_TSS
11
133
8.2
2.8
2.9
3.787
0.0001
0.0069
GO:0006281 DNA repair
12none
 
 
at_TSS
11
122
9
2.8
3.17
4.124
0
0.0015
GO:0000279 M phase
13none
 
 
after_TSS
10
90
11.1
2.9
3.72
4.549
0
0.0019
GO:0045182 translation regulator activity
14none
 
 
at_TSS
10
128
7.8
2.8
2.74
3.401
0.0006
0.0245
GO:0043037 translation
15none
 
 
after_TSS
10
86
11.6
2.9
3.89
4.729
0
0.0008
GO:0008135 translation factor activity, nucleic acid binding
16none
 
 
at_TSS
10
95
10.5
2.8
3.7
4.524
0
0.0001
GO:0031497 chromatin assembly
17TF_NFY
 
 
at_TSS
12
220
5.4
0.9
5.54
6.783
0
0
GO:0051276 chromosome organization and biogenesis
18TF_NFY
 
 
at_TSS
11
208
5.2
0.9
5.37
6.347
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)