CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_ARP1

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_ARP1
TF_ARP1 alone
In pair
with
1GO:0003677 DNA binding
1509
after_TSS
91
yes
 
2GO:0045449 regulation of transcription
1410
after_TSS
83
yes
 
3GO:0030528 transcription regulator activity
941
after_TSS
63
yes
 
4GO:0003700 transcription factor activity
719
after_TSS
56
yes
 
5GO:0030246 carbohydrate binding
208
after_TSS
46
yes
 
6GO:0005529 sugar binding
144
after_TSS
34
yes
 
7GO:0048519 negative regulation of biological process
408
before_TSS
33
yes
 
8GO:0048523 negative regulation of cellular process
375
before_TSS
31
yes
 
9GO:0051243 negative regulation of cellular physiological process
330
before_TSS
27
yes
 
10GO:0043118 negative regulation of physiological process
342
before_TSS
27
yes
 
11GO:0009613 response to pest, pathogen or parasite
221
before_TSS
20
 
TF_POU3F,
12GO:0043207 response to external biotic stimulus
237
before_TSS
20
 
TF_POU3F,
13GO:0007389 pattern specification
128
after_TSS
15
yes
 
14GO:0004497 monooxygenase activity
90
at_TSS,before_TSS
15
yes
TF_NFY,
15GO:0051186 cofactor metabolism
181
after_TSS
14
 
TF_AP2, TF_AP2A,
16GO:0004857 enzyme inhibitor activity
155
before_TSS
12
 
MIT_174,
17GO:0000003 reproduction
171
before_TSS
12
 
TF_TATA,
18GO:0019941 modification-dependent protein catabolism
94
before_TSS
11
 
TF_TST,
19GO:0019953 sexual reproduction
145
before_TSS
11
 
TF_TATA,
20GO:0006511 ubiquitin-dependent protein catabolism
94
before_TSS
11
 
TF_TST,
21GO:0006954 inflammatory response
101
before_TSS
10
 
TF_POU3F,
22GO:0007276 gametogenesis
119
before_TSS
10
 
TF_TATA,

Pairs of TF_ARP1 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_TATA
before_TSS
3
GO:0000003 reproduction
12
171
2TF_POU3F
before_TSS
3
GO:0043207 response to external biotic stimulus
20
237
3TF_TST
before_TSS
2
GO:0019941 modification-dependent protein catabolism
11
94
4TF_NFY
before_TSS
1
GO:0004497 monooxygenase activity
10
90
5TF_AP2A
after_TSS
1
GO:0051186 cofactor metabolism
14
181
6TF_AP2
after_TSS
1
GO:0051186 cofactor metabolism
14
181
7MIT_174
before_TSS
1
GO:0004857 enzyme inhibitor activity
12
155

Details on Gene Ontology terms for targets of TF_ARP1

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
after_TSS
91
1509
6
3.9
1.53
4.524
0
0.0001
GO:0003677 DNA binding
2none
 
yes
after_TSS
83
1410
5.8
3.9
1.5
4.057
0
0.0005
GO:0045449 regulation of transcription
3none
 
yes
after_TSS
63
941
6.6
3.9
1.7
4.575
0
0
GO:0030528 transcription regulator activity
4none
 
yes
after_TSS
56
719
7.7
3.9
1.98
5.518
0
0
GO:0003700 transcription factor activity
5none
 
 
after_TSS
46
208
22.1
14.5
1.51
3.104
0.0019
0.0388
GO:0030246 carbohydrate binding
6none
 
 
after_TSS
34
144
23.6
14.5
1.61
3.087
0.002
0.0296
GO:0005529 sugar binding
7none
 
yes
before_TSS
33
408
8
4.8
1.66
3.076
0.002
0.0333
GO:0048519 negative regulation of biological process
8none
 
yes
before_TSS
31
375
8.2
4.8
1.69
3.108
0.0018
0.0344
GO:0048523 negative regulation of cellular process
9none
 
yes
before_TSS
27
330
8.1
4.8
1.68
2.837
0.0045
0.0537
GO:0051243 negative regulation of cellular physiological process
10none
 
yes
before_TSS
27
342
7.8
4.8
1.62
2.64
0.0082
0.0842
GO:0043118 negative regulation of physiological process
11none
 
yes
after_TSS
26
302
8.6
3.9
2.19
4.257
0
0.0003
GO:0005667
12none
 
 
at_TSS
16
97
16.4
7.4
2.22
3.419
0.0006
0.046
GO:0005792
13none
 
 
at_TSS
15
90
16.6
7.4
2.24
3.354
0.0007
0.0208
GO:0004497 monooxygenase activity
14none
 
yes
after_TSS
15
128
11.7
3.9
2.99
4.574
0
0.0001
GO:0007389 pattern specification
15MIT_174
 
 
before_TSS
12
155
7.7
1.9
3.87
5.14
0
0.0118
GO:0004857 enzyme inhibitor activity
16TF_AHR
 
 
after_TSS
29
547
5.3
2.3
2.26
4.693
0
0.0232
GO:0005739
17TF_AP2
 
 
after_TSS
14
181
7.7
2.4
3.16
4.641
0
0.0187
GO:0051186 cofactor metabolism
18TF_AP2A
 
 
after_TSS
14
181
7.7
2.4
3.2
4.701
0
0.0159
GO:0051186 cofactor metabolism
19TF_ATF1
 
 
after_TSS
28
547
5.1
2.2
2.23
4.529
0
0.032
GO:0005739
20TF_NFY
 
 
before_TSS
10
90
11.1
2.4
4.51
5.314
0
0.0023
GO:0004497 monooxygenase activity
21TF_POU3F
 
 
before_TSS
20
221
9
2.5
3.54
6.179
0
0
GO:0009613 response to pest, pathogen or parasite
22TF_POU3F
 
 
before_TSS
20
237
8.4
2.5
3.3
5.801
0
0.0002
GO:0043207 response to external biotic stimulus
23TF_POU3F
 
 
before_TSS
10
101
9.9
2.5
3.87
4.701
0
0.0372
GO:0006954 inflammatory response
24TF_TATA
 
 
before_TSS
12
171
7
1.8
3.77
5.029
0
0.0213
GO:0000003 reproduction
25TF_TATA
 
 
before_TSS
11
145
7.5
1.8
4.08
5.136
0
0.0121
GO:0019953 sexual reproduction
26TF_TATA
 
 
before_TSS
10
119
8.4
1.8
4.52
5.311
0
0.0047
GO:0007276 gametogenesis
27TF_TST
 
 
before_TSS
11
94
11.7
2.8
4.14
5.213
0
0.004
GO:0006511 ubiquitin-dependent protein catabolism
28TF_TST
 
 
before_TSS
11
94
11.7
2.8
4.14
5.213
0
0.004
GO:0019941 modification-dependent protein catabolism