CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_CDP

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_CDP
TF_CDP alone
In pair
with
1GO:0007275 development
1378
before_TSS
89
yes
 
2GO:0009607 response to biotic stimulus
483
at_TSS,after_TSS
84
yes
 
3GO:0006952 defense response
463
at_TSS,after_TSS
83
yes
 
4GO:0009605 response to external stimulus
489
at_TSS,after_TSS
82
yes
 
5GO:0009653 morphogenesis
811
before_TSS
64
yes
 
6GO:0048513 organ development
852
before_TSS
61
yes
 
7GO:0006955 immune response
379
after_TSS
60
yes
 
8GO:0030528 transcription regulator activity
941
before_TSS
59
yes
 
9GO:0009887 organ morphogenesis
674
before_TSS
53
yes
 
10GO:0003700 transcription factor activity
719
before_TSS
48
yes
 
11GO:0043207 response to external biotic stimulus
237
after_TSS
44
yes
 
12GO:0009613 response to pest, pathogen or parasite
221
after_TSS
42
yes
 
13GO:0030246 carbohydrate binding
208
before_TSS,after_TSS
39
yes
TF_POU3F,
14GO:0030154 cell differentiation
538
before_TSS
36
yes
 
15GO:0005529 sugar binding
144
before_TSS,after_TSS
30
yes
TF_POU3F, TF_GATA,
16GO:0006512 ubiquitin cycle
390
before_TSS
25
 
MIT_029,
17GO:0006694 steroid biosynthesis
42
before_TSS
23
yes
 
18GO:0005179 hormone activity
97
after_TSS
22
yes
 
19GO:0007399 nervous system development
301
before_TSS
22
yes
 
20GO:0015290 electrochemical potential-driven transporter activity
171
at_TSS
19
yes
 
21GO:0015291 porter activity
170
at_TSS
19
yes
 
22GO:0006396 RNA processing
273
after_TSS
18
yes
 
23GO:0004497 monooxygenase activity
90
before_TSS
18
yes
 
24GO:0005125 cytokine activity
173
before_TSS
17
yes
 
25GO:0007156 homophilic cell adhesion
76
at_TSS,after_TSS
17
yes
 
26GO:0004857 enzyme inhibitor activity
155
at_TSS
16
yes
 
27GO:0006959 humoral immune response
58
after_TSS
16
yes
 
28GO:0016337 cell-cell adhesion
99
at_TSS
14
yes
 
29GO:0046903 secretion
123
before_TSS
11
 
TF_MZF,
30GO:0004263 chymotrypsin activity
90
at_TSS
11
yes
 
31GO:0004295 trypsin activity
101
at_TSS
11
yes
 
32GO:0016758 transferase activity, transferring hexosyl groups
109
before_TSS
11
 
TF_NFY,
33GO:0007389 pattern specification
128
after_TSS
10
yes
 

Pairs of TF_CDP binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_POU3F
before_TSS
2
GO:0030246 carbohydrate binding
19
208
2MIT_029
before_TSS
1
GO:0006512 ubiquitin cycle
25
390
3TF_NFY
before_TSS
1
GO:0016758 transferase activity, transferring hexosyl groups
11
109
4TF_MZF
before_TSS
1
GO:0046903 secretion
11
123
5TF_GATA
before_TSS
1
GO:0005529 sugar binding
14
144

Details on Gene Ontology terms for targets of TF_CDP

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
89
1378
6.4
4.1
1.54
4.508
0
0
GO:0007275 development
2none
 
 
after_TSS
84
483
17.3
10.5
1.65
5.04
0
0
GO:0009607 response to biotic stimulus
3none
 
 
after_TSS
83
463
17.9
10.5
1.7
5.313
0
0
GO:0006952 defense response
4none
 
 
after_TSS
82
489
16.7
10.5
1.59
4.614
0
0.0001
GO:0009605 response to external stimulus
5none
 
 
after_TSS
70
356
19.6
10.5
1.87
5.722
0
0
GO:0005576
6none
 
yes
before_TSS
64
811
7.8
4.1
1.89
5.483
0
0
GO:0009653 morphogenesis
7none
 
yes
before_TSS
61
852
7.1
4.1
1.71
4.522
0
0.0001
GO:0048513 organ development
8none
 
 
after_TSS
60
379
15.8
10.5
1.5
3.438
0.0005
0.0093
GO:0006955 immune response
9none
 
yes
before_TSS
59
941
6.2
4.1
1.5
3.35
0.0008
0.0025
GO:0030528 transcription regulator activity
10none
 
yes
before_TSS
53
674
7.8
4.1
1.88
4.931
0
0
GO:0009887 organ morphogenesis
11none
 
yes
before_TSS
48
719
6.6
4.1
1.59
3.461
0.0005
0.0019
GO:0003700 transcription factor activity
12none
 
 
after_TSS
44
237
18.5
10.5
1.76
4.089
0
0.0015
GO:0043207 response to external biotic stimulus
13none
 
 
after_TSS
42
221
19
10.5
1.8
4.161
0
0.0014
GO:0009613 response to pest, pathogen or parasite
14none
 
 
after_TSS
39
208
18.7
10.5
1.78
3.913
0
0.0066
GO:0030246 carbohydrate binding
15none
 
 
at_TSS
38
483
7.8
5
1.56
2.93
0.0033
0.0229
GO:0009607 response to biotic stimulus
16none
 
 
at_TSS
37
489
7.5
5
1.5
2.638
0.0083
0.0598
GO:0009605 response to external stimulus
17none
 
yes
before_TSS
36
538
6.6
4.1
1.6
2.988
0.0028
0.0239
GO:0030154 cell differentiation
18none
 
 
at_TSS
36
463
7.7
5
1.55
2.774
0.0055
0.0316
GO:0006952 defense response
19none
 
 
after_TSS
30
144
20.8
10.5
1.98
4.068
0
0.0017
GO:0005529 sugar binding
20none
 
yes
before_TSS
26
302
8.6
4.1
2.06
3.904
0
0.0007
GO:0005667
21none
 
 
before_TSS
23
42
54.7
30
1.82
3.497
0.0004
0.0574
GO:0006694 steroid biosynthesis
22none
 
 
after_TSS
22
97
22.6
10.5
2.15
3.928
0
0.0044
GO:0005179 hormone activity
23none
 
yes
before_TSS
22
301
7.3
4.1
1.75
2.755
0.0058
0.0311
GO:0007399 nervous system development
24none
 
 
at_TSS
19
171
11.1
5
2.21
3.678
0.0002
0.043
GO:0015290 electrochemical potential-driven transporter activity
25none
 
yes
after_TSS
19
302
6.2
2.9
2.11
3.436
0.0005
0.0051
GO:0005667
26none
 
 
at_TSS
19
170
11.1
5
2.22
3.706
0.0002
0.0385
GO:0015291 porter activity
27none
yes
 
before_TSS
19
144
13.1
6.7
1.94
3.066
0.0021
0.0794
GO:0005529 sugar binding
28none
yes
 
before_TSS
18
90
20
6.7
2.94
4.992
0
0.0002
GO:0004497 monooxygenase activity
29none
 
yes
after_TSS
18
273
6.5
2.9
2.21
3.56
0.0003
0.0678
GO:0006396 RNA processing
30none
 
yes
before_TSS
17
173
9.8
4.1
2.35
3.745
0.0001
0.0165
GO:0005125 cytokine activity
31none
 
 
after_TSS
17
76
22.3
10.5
2.13
3.385
0.0007
0.0434
GO:0007156 homophilic cell adhesion
32none
 
 
at_TSS
16
155
10.3
5
2.05
3.046
0.0023
0.053
GO:0004857 enzyme inhibitor activity
33none
 
 
after_TSS
16
58
27.5
10.5
2.62
4.254
0
0.0015
GO:0006959 humoral immune response
34none
 
 
after_TSS
15
60
25
10.5
2.38
3.672
0.0002
0.0088
GO:0009897
35none
 
 
at_TSS
14
99
14.1
5
2.81
4.177
0
0.0036
GO:0016337 cell-cell adhesion
36none
 
 
at_TSS
12
76
15.7
5
3.14
4.316
0
0.0019
GO:0007156 homophilic cell adhesion
37none
 
 
at_TSS
11
90
12.2
5
2.43
3.144
0.0016
0.0304
GO:0004263 chymotrypsin activity
38none
 
 
at_TSS
11
101
10.8
5
2.17
2.716
0.0066
0.0895
GO:0004295 trypsin activity
39none
 
yes
after_TSS
10
128
7.8
2.9
2.62
3.239
0.0011
0.0133
GO:0007389 pattern specification
40MIT_029
 
 
before_TSS
25
390
6.4
2.9
2.19
4.152
0
0.089
GO:0006512 ubiquitin cycle
41TF_GATA
 
 
before_TSS
14
144
9.7
2.7
3.58
5.213
0
0.0013
GO:0005529 sugar binding
42TF_MZF
 
 
before_TSS
11
123
8.9
2.3
3.85
4.901
0
0.0412
GO:0046903 secretion
43TF_NFY
 
 
before_TSS
11
109
10
2.7
3.62
4.657
0
0.0693
GO:0016758 transferase activity, transferring hexosyl groups
44TF_POU3F
 
 
before_TSS
19
208
9.1
3.4
2.67
4.573
0
0.0519
GO:0030246 carbohydrate binding
45TF_POU3F
 
 
before_TSS
16
144
11.1
3.4
3.24
5.107
0
0.0017
GO:0005529 sugar binding