CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_CDX

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_CDX
TF_CDX alone
In pair
with
1GO:0050896 response to stimulus
1020
after_TSS
78
yes
 
2GO:0050874 organismal physiological process
881
after_TSS
74
yes
 
3GO:0009605 response to external stimulus
489
after_TSS
48
yes
 
4GO:0009607 response to biotic stimulus
483
after_TSS
38
yes
 
5GO:0006952 defense response
463
after_TSS
37
yes
 
6GO:0050877 neurophysiological process
312
after_TSS
33
yes
 
7GO:0006955 immune response
379
after_TSS
29
yes
 
8GO:0009628 response to abiotic stimulus
270
after_TSS
28
yes
 
9GO:0007600 sensory perception
196
after_TSS
27
yes
 
10GO:0005198 structural molecule activity
500
at_TSS
26
yes
 
11GO:0030705 cytoskeleton-dependent intracellular transport
80
before_TSS
26
yes
MIT_055NFAT,
12GO:0007018 microtubule-based movement
78
before_TSS
26
yes
MIT_055NFAT,
13GO:0004930 G-protein coupled receptor activity
357
after_TSS
25
yes
 
14GO:0001584 rhodopsin-like receptor activity
283
after_TSS
23
yes
 
15GO:0016052 carbohydrate catabolism
59
before_TSS
20
yes
 
16GO:0044275 cellular carbohydrate catabolism
59
before_TSS
20
yes
 
17GO:0046164 alcohol catabolism
52
before_TSS
19
yes
 
18GO:0043207 response to external biotic stimulus
237
at_TSS,after_TSS
19
yes
 
19GO:0006007 glucose catabolism
50
before_TSS
18
yes
 
20GO:0019320 hexose catabolism
50
before_TSS
18
yes
 
21GO:0046365 monosaccharide catabolism
50
before_TSS
18
yes
 
22GO:0006096 glycolysis
43
before_TSS
17
yes
 
23GO:0005125 cytokine activity
173
after_TSS
17
yes
 
24GO:0009611 response to wounding
180
after_TSS
17
yes
 
25GO:0009613 response to pest, pathogen or parasite
221
after_TSS
17
yes
 
26GO:0042221 response to chemical substance
155
after_TSS
16
yes
 
27GO:0006935 chemotaxis
79
after_TSS
14
yes
 
28GO:0042330 taxis
79
after_TSS
14
yes
 
29GO:0016337 cell-cell adhesion
99
after_TSS
14
yes
 
30GO:0030246 carbohydrate binding
208
before_TSS
12
 
TF_CDC5, TF_POU6F, TF_CHX,
31GO:0006954 inflammatory response
101
after_TSS
12
yes
 
32GO:0006066 alcohol metabolism
164
before_TSS
12
 
TF_FOXJ2,
33GO:0008610 lipid biosynthesis
146
before_TSS
11
 
TF_POLYA,
34GO:0050953 sensory perception of light
64
after_TSS
10
yes
 
35GO:0007389 pattern specification
128
before_TSS
10
yes
 
36GO:0005529 sugar binding
144
before_TSS
10
 
TF_CHX,
37GO:0007601 visual perception
64
after_TSS
10
yes
 

Pairs of TF_CDX binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_CHX
before_TSS
2
GO:0030246 carbohydrate binding
12
208
2MIT_055NFAT
before_TSS
2
GO:0007018 microtubule-based movement
10
78
3TF_POU6F
before_TSS
1
GO:0030246 carbohydrate binding
12
208
4TF_FOXJ2
before_TSS
1
GO:0006066 alcohol metabolism
12
164
5TF_CDC5
before_TSS
1
GO:0030246 carbohydrate binding
11
208
6TF_POLYA
before_TSS
1
GO:0008610 lipid biosynthesis
11
146

Details on Gene Ontology terms for targets of TF_CDX

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
after_TSS
78
1020
7.6
4.3
1.76
5.44
0
0
GO:0050896 response to stimulus
2none
 
 
after_TSS
74
881
8.3
4.3
1.94
6.164
0
0
GO:0050874 organismal physiological process
3none
 
 
after_TSS
48
489
9.8
4.3
2.26
6.085
0
0
GO:0009605 response to external stimulus
4none
 
 
after_TSS
38
483
7.8
4.3
1.81
3.898
0
0.0012
GO:0009607 response to biotic stimulus
5none
 
 
after_TSS
37
463
7.9
4.3
1.84
3.947
0
0.0011
GO:0006952 defense response
6none
 
 
after_TSS
33
312
10.5
4.3
2.44
5.493
0
0
GO:0050877 neurophysiological process
7none
 
 
after_TSS
31
356
8.7
4.3
2.01
4.119
0
0.0009
GO:0005576
8none
 
 
after_TSS
29
379
7.6
4.3
1.76
3.228
0.0012
0.0157
GO:0006955 immune response
9none
 
 
after_TSS
28
270
10.3
4.3
2.39
4.932
0
0.0002
GO:0009628 response to abiotic stimulus
10none
 
 
after_TSS
27
196
13.7
4.3
3.18
6.55
0
0
GO:0007600 sensory perception
11none
 
 
before_TSS
26
80
32.5
16.4
1.97
3.895
0
0.0359
GO:0030705 cytoskeleton-dependent intracellular transport
12none
 
 
before_TSS
26
78
33.3
16.4
2.03
4.045
0
0.0191
GO:0007018 microtubule-based movement
13none
 
 
at_TSS
26
500
5.2
2.8
1.83
3.255
0.0011
0.0691
GO:0005198 structural molecule activity
14none
 
 
after_TSS
25
357
7
4.3
1.61
2.519
0.0117
0.0828
GO:0004930 G-protein coupled receptor activity
15none
 
 
after_TSS
23
283
8.1
4.3
1.87
3.176
0.0014
0.0218
GO:0001584 rhodopsin-like receptor activity
16none
 
 
at_TSS
22
356
6.1
2.8
2.18
3.861
0.0001
0.0027
GO:0005576
17none
 
 
before_TSS
20
59
33.8
16.4
2.06
3.633
0.0002
0.0512
GO:0016052 carbohydrate catabolism
18none
 
 
before_TSS
20
59
33.8
16.4
2.06
3.633
0.0002
0.0512
GO:0044275 cellular carbohydrate catabolism
19none
 
 
after_TSS
19
237
8
4.3
1.85
2.816
0.0048
0.0378
GO:0043207 response to external biotic stimulus
20none
 
 
before_TSS
19
52
36.5
16.4
2.22
3.925
0
0.0317
GO:0046164 alcohol catabolism
21none
 
 
before_TSS
18
50
36
16.4
2.19
3.745
0.0001
0.033
GO:0019320 hexose catabolism
22none
 
 
before_TSS
18
50
36
16.4
2.19
3.745
0.0001
0.033
GO:0006007 glucose catabolism
23none
 
 
before_TSS
18
50
36
16.4
2.19
3.745
0.0001
0.033
GO:0046365 monosaccharide catabolism
24none
 
 
before_TSS
17
43
39.5
16.4
2.4
4.099
0
0.0151
GO:0006096 glycolysis
25none
 
 
after_TSS
17
173
9.8
4.3
2.26
3.578
0.0003
0.0316
GO:0005125 cytokine activity
26none
 
 
after_TSS
17
221
7.6
4.3
1.77
2.478
0.0132
0.0879
GO:0009613 response to pest, pathogen or parasite
27none
 
yes
before_TSS
17
302
5.6
2.2
2.52
4.049
0
0.0004
GO:0005667
28none
 
 
after_TSS
17
180
9.4
4.3
2.18
3.397
0.0006
0.0415
GO:0009611 response to wounding
29none
 
 
after_TSS
16
155
10.3
4.3
2.38
3.689
0.0002
0.0824
GO:0042221 response to chemical substance
30none
 
 
after_TSS
14
79
17.7
4.3
4.09
5.867
0
0
GO:0006935 chemotaxis
31none
 
 
after_TSS
14
79
17.7
4.3
4.09
5.867
0
0
GO:0042330 taxis
32none
 
 
after_TSS
14
99
14.1
4.3
3.26
4.816
0
0.0002
GO:0016337 cell-cell adhesion
33none
 
 
at_TSS
13
237
5.4
2.8
1.93
2.483
0.013
0.0934
GO:0043207 response to external biotic stimulus
34none
 
 
after_TSS
12
101
11.8
4.3
2.74
3.744
0.0001
0.022
GO:0006954 inflammatory response
35none
 
yes
before_TSS
10
128
7.8
2.2
3.5
4.298
0
0.0002
GO:0007389 pattern specification
36none
 
 
after_TSS
10
64
15.6
4.3
3.6
4.451
0
0.0031
GO:0050953 sensory perception of light
37none
 
 
after_TSS
10
64
15.6
4.3
3.6
4.451
0
0.0031
GO:0007601 visual perception
38MIT_055NFAT
 
 
before_TSS
10
78
12.8
3
4.23
5.068
0
0.0173
GO:0007018 microtubule-based movement
39MIT_055NFAT
 
 
before_TSS
10
80
12.5
3
4.13
4.965
0
0.0296
GO:0030705 cytoskeleton-dependent intracellular transport
40TF_CDC5
 
 
before_TSS
11
208
5.2
1.5
3.35
4.33
0
0.0585
GO:0030246 carbohydrate binding
41TF_CHX
 
 
before_TSS
12
208
5.7
1.7
3.24
4.397
0
0.0592
GO:0030246 carbohydrate binding
42TF_CHX
 
 
before_TSS
10
144
6.9
1.7
3.9
4.722
0
0.0067
GO:0005529 sugar binding
43TF_FOXJ2
 
 
before_TSS
12
164
7.3
2
3.51
4.727
0
0.0984
GO:0006066 alcohol metabolism
44TF_POLYA
 
 
before_TSS
11
146
7.5
1.9
3.94
4.997
0
0.0083
GO:0008610 lipid biosynthesis
45TF_POU6F
 
 
before_TSS
12
208
5.7
1.7
3.3
4.474
0
0.0552
GO:0030246 carbohydrate binding