CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_CHX

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_CHX
TF_CHX alone
In pair
with
1GO:0007275 development
1378
before_TSS
131
yes
 
2GO:0006350 transcription
1461
before_TSS
115
yes
 
3GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
1420
before_TSS
113
yes
 
4GO:0045449 regulation of transcription
1410
before_TSS
113
yes
 
5GO:0006351 transcription, DNA-dependent
1383
before_TSS
112
yes
 
6GO:0006355 regulation of transcription, DNA-dependent
1362
before_TSS
109
yes
 
7GO:0030528 transcription regulator activity
941
before_TSS
86
yes
 
8GO:0048513 organ development
852
before_TSS
86
yes
 
9GO:0009653 morphogenesis
811
before_TSS
86
yes
 
10GO:0009887 organ morphogenesis
674
before_TSS
74
yes
 
11GO:0003700 transcription factor activity
719
before_TSS
71
yes
 
12GO:0030154 cell differentiation
538
before_TSS
55
yes
 
13GO:0007186 G-protein coupled receptor protein signaling pathway
495
after_TSS
55
yes
 
14GO:0007399 nervous system development
301
before_TSS
43
yes
TF_MAZR,
15GO:0016491 oxidoreductase activity
573
at_TSS
41
yes
 
16GO:0004930 G-protein coupled receptor activity
357
after_TSS
40
yes
 
17GO:0050877 neurophysiological process
312
after_TSS
40
yes
 
18GO:0009605 response to external stimulus
489
at_TSS
38
yes
 
19GO:0001584 rhodopsin-like receptor activity
283
after_TSS
34
yes
 
20GO:0007600 sensory perception
196
after_TSS
27
yes
 
21GO:0000902 cellular morphogenesis
238
before_TSS
24
yes
 
22GO:0006366 transcription from RNA polymerase II promoter
231
before_TSS
23
yes
 
23GO:0007610 behavior
229
before_TSS
22
yes
 
24GO:0048468 cell development
162
before_TSS
21
yes
 
25GO:0009790 embryonic development
170
before_TSS
20
yes
 
26GO:0006357 regulation of transcription from RNA polymerase II promoter
191
before_TSS
20
yes
 
27GO:0030182 neuron differentiation
137
before_TSS
18
yes
 
28GO:0007417 central nervous system development
76
before_TSS
17
yes
 
29GO:0004857 enzyme inhibitor activity
155
at_TSS
16
yes
 
30GO:0000904 cellular morphogenesis during differentiation
107
before_TSS
16
yes
 
31GO:0007420 brain development
63
before_TSS
15
yes
 
32GO:0007389 pattern specification
128
before_TSS
14
yes
 
33GO:0007409 axonogenesis
81
before_TSS
14
yes
 
34GO:0031175 neurite morphogenesis
96
before_TSS
14
yes
 
35GO:0048667 neuron morphogensis during differentiation
96
before_TSS
14
yes
 
36GO:0016055 Wnt receptor signaling pathway
81
before_TSS
14
yes
 
37GO:0048666 neuron development
108
before_TSS
14
yes
 
38GO:0004497 monooxygenase activity
90
at_TSS
14
yes
 
39GO:0004866 endopeptidase inhibitor activity
112
at_TSS
14
yes
 
40GO:0030414 protease inhibitor activity
112
at_TSS
14
yes
 
41GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
at_TSS
13
yes
 
42GO:0030246 carbohydrate binding
208
before_TSS
12
 
TF_CDX,
43GO:0043037 translation
128
before_TSS
11
 
TF_COUP,
44GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
85
before_TSS
11
 
TF_POU6F,
45GO:0005529 sugar binding
144
before_TSS
10
 
TF_CDX,
46GO:0048598 embryonic morphogenesis
62
before_TSS
10
yes
 

Pairs of TF_CHX binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_CDX
before_TSS
2
GO:0030246 carbohydrate binding
12
208
2TF_MAZR
before_TSS
1
GO:0007399 nervous system development
20
301
3TF_POU6F
before_TSS
1
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
11
85
4TF_COUP
before_TSS
1
GO:0043037 translation
11
128

Details on Gene Ontology terms for targets of TF_CHX

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
131
1378
9.5
5.2
1.81
7.554
0
0
GO:0007275 development
2none
 
yes
before_TSS
115
1461
7.8
5.2
1.5
4.816
0
0
GO:0006350 transcription
3none
 
yes
before_TSS
113
1410
8
5.2
1.52
4.976
0
0
GO:0045449 regulation of transcription
4none
 
yes
before_TSS
113
1420
7.9
5.2
1.51
4.895
0
0
GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
5none
 
yes
before_TSS
112
1383
8
5.2
1.54
5.072
0
0
GO:0006351 transcription, DNA-dependent
6none
 
yes
before_TSS
109
1362
8
5.2
1.52
4.86
0
0
GO:0006355 regulation of transcription, DNA-dependent
7none
 
yes
before_TSS
86
811
10.6
5.2
2.02
7.1
0
0
GO:0009653 morphogenesis
8none
 
yes
before_TSS
86
941
9.1
5.2
1.74
5.592
0
0
GO:0030528 transcription regulator activity
9none
 
yes
before_TSS
86
852
10
5.2
1.92
6.597
0
0
GO:0048513 organ development
10none
 
yes
before_TSS
74
674
10.9
5.2
2.09
6.883
0
0
GO:0009887 organ morphogenesis
11none
 
yes
before_TSS
71
719
9.8
5.2
1.88
5.753
0
0
GO:0003700 transcription factor activity
12none
 
yes
before_TSS
55
538
10.2
5.2
1.95
5.308
0
0
GO:0030154 cell differentiation
13none
 
 
after_TSS
55
495
11.1
7.2
1.53
3.404
0.0006
0.0186
GO:0007186 G-protein coupled receptor protein signaling pathway
14none
 
yes
before_TSS
43
301
14.2
5.2
2.72
7.134
0
0
GO:0007399 nervous system development
15none
 
 
at_TSS
41
573
7.1
4.6
1.54
2.939
0.0032
0.086
GO:0016491 oxidoreductase activity
16none
 
 
after_TSS
40
312
12.8
7.2
1.77
3.863
0.0001
0.0068
GO:0050877 neurophysiological process
17none
 
 
after_TSS
40
357
11.2
7.2
1.54
2.943
0.0032
0.0339
GO:0004930 G-protein coupled receptor activity
18none
 
 
at_TSS
38
489
7.7
4.6
1.67
3.366
0.0007
0.0087
GO:0009605 response to external stimulus
19none
 
yes
before_TSS
37
302
12.2
5.2
2.33
5.539
0
0
GO:0005667
20none
 
 
after_TSS
34
283
12
7.2
1.66
3.144
0.0016
0.0225
GO:0001584 rhodopsin-like receptor activity
21none
 
 
at_TSS
29
356
8.1
4.6
1.75
3.197
0.0013
0.0158
GO:0005576
22none
 
 
after_TSS
27
196
13.7
7.2
1.9
3.567
0.0003
0.012
GO:0007600 sensory perception
23none
 
yes
before_TSS
24
238
10
5.2
1.92
3.388
0.0007
0.0257
GO:0000902 cellular morphogenesis
24none
 
yes
before_TSS
23
231
9.9
5.2
1.9
3.249
0.0011
0.0353
GO:0006366 transcription from RNA polymerase II promoter
25none
 
yes
before_TSS
22
229
9.6
5.2
1.83
2.995
0.0027
0.0386
GO:0007610 behavior
26none
 
yes
before_TSS
21
162
12.9
5.2
2.47
4.442
0
0.0004
GO:0048468 cell development
27none
 
yes
before_TSS
20
170
11.7
5.2
2.24
3.846
0.0001
0.0031
GO:0009790 embryonic development
28none
 
yes
before_TSS
20
191
10.4
5.2
1.99
3.271
0.001
0.0392
GO:0006357 regulation of transcription from RNA polymerase II promoter
29none
 
yes
before_TSS
18
137
13.1
5.2
2.5
4.173
0
0.0008
GO:0030182 neuron differentiation
30none
 
yes
before_TSS
17
76
22.3
5.2
4.27
6.723
0
0
GO:0007417 central nervous system development
31none
 
 
at_TSS
16
155
10.3
4.6
2.22
3.389
0.0007
0.0366
GO:0004857 enzyme inhibitor activity
32none
 
yes
before_TSS
16
107
14.9
5.2
2.85
4.53
0
0.0005
GO:0000904 cellular morphogenesis during differentiation
33none
 
yes
before_TSS
15
63
23.8
5.2
4.54
6.633
0
0
GO:0007420 brain development
34none
 
yes
before_TSS
14
96
14.5
5.2
2.78
4.125
0
0.0027
GO:0031175 neurite morphogenesis
35none
 
yes
before_TSS
14
108
12.9
5.2
2.47
3.619
0.0002
0.0135
GO:0048666 neuron development
36none
 
 
at_TSS
14
90
15.5
4.6
3.35
4.945
0
0.0001
GO:0004497 monooxygenase activity
37none
 
yes
before_TSS
14
128
10.9
5.2
2.08
2.909
0.0036
0.0241
GO:0007389 pattern specification
38none
 
yes
before_TSS
14
96
14.5
5.2
2.78
4.125
0
0.0027
GO:0048667 neuron morphogensis during differentiation
39none
 
yes
before_TSS
14
81
17.2
5.2
3.29
4.881
0
0.0001
GO:0007409 axonogenesis
40none
 
yes
before_TSS
14
81
17.2
5.2
3.29
4.881
0
0.0003
GO:0016055 Wnt receptor signaling pathway
41none
 
 
at_TSS
14
112
12.5
4.6
2.69
3.977
0
0.0063
GO:0030414 protease inhibitor activity
42none
 
 
at_TSS
14
112
12.5
4.6
2.69
3.977
0
0.0063
GO:0004866 endopeptidase inhibitor activity
43none
 
 
at_TSS
13
91
14.2
4.6
3.08
4.395
0
0.0013
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
44none
 
 
at_TSS
11
97
11.3
4.6
2.44
3.153
0.0016
0.0844
GO:0005792
45none
 
yes
before_TSS
10
62
16.1
5.2
3.07
3.858
0.0001
0.0059
GO:0048598 embryonic morphogenesis
46TF_CDX
 
 
before_TSS
12
208
5.7
1.7
3.24
4.397
0
0.0592
GO:0030246 carbohydrate binding
47TF_CDX
 
 
before_TSS
10
144
6.9
1.7
3.9
4.722
0
0.0067
GO:0005529 sugar binding
48TF_COUP
 
 
before_TSS
11
128
8.5
2.3
3.7
4.736
0
0.0471
GO:0043037 translation
49TF_MAZR
 
 
before_TSS
20
301
6.6
2.3
2.87
5.061
0
0.009
GO:0007399 nervous system development
50TF_POU6F
 
 
before_TSS
11
85
12.9
3.5
3.67
4.729
0
0.0975
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor