CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_CLOX

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_CLOX
TF_CLOX alone
In pair
with
1GO:0007275 development
1378
before_TSS
92
yes
 
2GO:0009605 response to external stimulus
489
after_TSS
79
yes
 
3GO:0030528 transcription regulator activity
941
before_TSS
61
yes
 
4GO:0009653 morphogenesis
811
before_TSS
60
yes
 
5GO:0048513 organ development
852
before_TSS
59
yes
 
6GO:0003700 transcription factor activity
719
before_TSS
51
yes
 
7GO:0009887 organ morphogenesis
674
before_TSS
49
yes
 
8GO:0001584 rhodopsin-like receptor activity
283
after_TSS
48
yes
 
9GO:0030246 carbohydrate binding
208
after_TSS
38
yes
 
10GO:0009607 response to biotic stimulus
483
at_TSS
37
yes
 
11GO:0006952 defense response
463
at_TSS
36
yes
 
12GO:0009613 response to pest, pathogen or parasite
221
after_TSS
36
yes
 
13GO:0030154 cell differentiation
538
before_TSS
35
yes
 
14GO:0005102 receptor binding
406
at_TSS
32
yes
 
15GO:0005529 sugar binding
144
at_TSS,before_TSS,after_TSS
28
yes
TF_POU3F, TF_GATA, TF_CDC5,
16GO:0007399 nervous system development
301
before_TSS
25
yes
 
17GO:0006694 steroid biosynthesis
42
before_TSS
24
yes
 
18GO:0005179 hormone activity
97
at_TSS,after_TSS
20
yes
 
19GO:0016789 carboxylic ester hydrolase activity
80
after_TSS
20
yes
 
20GO:0004857 enzyme inhibitor activity
155
at_TSS
17
yes
 
21GO:0006396 RNA processing
273
after_TSS
17
yes
 
22GO:0006959 humoral immune response
58
after_TSS
16
yes
 
23GO:0007389 pattern specification
128
before_TSS,after_TSS
13
yes
 
24GO:0004497 monooxygenase activity
90
at_TSS
13
yes
 
25GO:0007608 perception of smell
37
after_TSS
11
yes
 
26GO:0008135 translation factor activity, nucleic acid binding
86
before_TSS
11
 
TF_S8,
27GO:0004984 olfactory receptor activity
28
after_TSS
11
yes
 
28GO:0006519 amino acid and derivative metabolism
219
before_TSS
11
 
MIT_046,
29GO:0007606 sensory perception of chemical stimulus
40
after_TSS
11
yes
 
30GO:0045182 translation regulator activity
90
before_TSS
11
 
TF_S8,
31GO:0016526 G-protein coupled receptor activity, unknown ligand
33
after_TSS
10
yes
 
32GO:0016337 cell-cell adhesion
99
before_TSS
10
 
TF_XVENT,
33GO:0007276 gametogenesis
119
before_TSS
10
 
TF_HMX,
34GO:0007156 homophilic cell adhesion
76
at_TSS
10
yes
 
35GO:0004867 serine-type endopeptidase inhibitor activity
77
at_TSS
10
yes
 

Pairs of TF_CLOX binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_S8
before_TSS
2
GO:0045182 translation regulator activity
11
90
2MIT_046
before_TSS
1
GO:0006519 amino acid and derivative metabolism
11
219
3TF_CDC5
before_TSS
1
GO:0005529 sugar binding
13
144
4TF_POU3F
before_TSS
1
GO:0005529 sugar binding
16
144
5TF_XVENT
before_TSS
1
GO:0016337 cell-cell adhesion
10
99
6TF_GATA
before_TSS
1
GO:0005529 sugar binding
16
144
7TF_HMX
before_TSS
1
GO:0007276 gametogenesis
10
119

Details on Gene Ontology terms for targets of TF_CLOX

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
92
1378
6.6
4.3
1.54
4.567
0
0
GO:0007275 development
2none
 
 
after_TSS
79
489
16.1
10.6
1.5
3.984
0
0.0008
GO:0009605 response to external stimulus
3none
 
 
after_TSS
69
356
19.3
10.6
1.81
5.379
0
0
GO:0005576
4none
 
yes
before_TSS
61
941
6.4
4.3
1.5
3.395
0.0006
0.0022
GO:0030528 transcription regulator activity
5none
 
yes
before_TSS
60
811
7.3
4.3
1.71
4.461
0
0
GO:0009653 morphogenesis
6none
 
yes
before_TSS
59
852
6.9
4.3
1.6
3.876
0.0001
0.0006
GO:0048513 organ development
7none
 
yes
before_TSS
51
719
7
4.3
1.64
3.768
0.0001
0.0007
GO:0003700 transcription factor activity
8none
 
yes
before_TSS
49
674
7.2
4.3
1.68
3.874
0.0001
0.0006
GO:0009887 organ morphogenesis
9none
 
 
after_TSS
48
283
16.9
10.6
1.58
3.447
0.0005
0.0103
GO:0001584 rhodopsin-like receptor activity
10none
 
 
after_TSS
38
208
18.2
10.6
1.7
3.562
0.0003
0.0122
GO:0030246 carbohydrate binding
11none
 
 
at_TSS
37
483
7.6
4.9
1.53
2.739
0.0061
0.0352
GO:0009607 response to biotic stimulus
12none
 
 
after_TSS
36
221
16.2
10.6
1.52
2.713
0.0066
0.0542
GO:0009613 response to pest, pathogen or parasite
13none
 
 
at_TSS
36
463
7.7
4.9
1.55
2.795
0.0051
0.0306
GO:0006952 defense response
14none
 
yes
before_TSS
35
538
6.5
4.3
1.5
2.548
0.0108
0.06
GO:0030154 cell differentiation
15none
 
 
at_TSS
32
406
7.8
4.9
1.57
2.711
0.0067
0.0982
GO:0005102 receptor binding
16none
 
yes
before_TSS
31
302
10.2
4.3
2.37
5.144
0
0
GO:0005667
17none
 
 
after_TSS
28
144
19.4
10.6
1.81
3.414
0.0006
0.0137
GO:0005529 sugar binding
18none
 
yes
before_TSS
25
301
8.3
4.3
1.92
3.442
0.0005
0.005
GO:0007399 nervous system development
19none
 
 
before_TSS
24
42
57.1
31
1.84
3.667
0.0002
0.0449
GO:0006694 steroid biosynthesis
20none
 
yes
after_TSS
23
302
7.6
2.8
2.65
5.007
0
0
GO:0005667
21none
 
 
after_TSS
20
80
25
10.6
2.33
4.151
0
0.006
GO:0016789 carboxylic ester hydrolase activity
22none
 
 
after_TSS
20
97
20.6
10.6
1.92
3.172
0.0015
0.0184
GO:0005179 hormone activity
23none
 
 
at_TSS
17
155
10.9
4.9
2.19
3.432
0.0005
0.0365
GO:0004857 enzyme inhibitor activity
24none
 
yes
after_TSS
17
273
6.2
2.8
2.17
3.364
0.0007
0.0937
GO:0006396 RNA processing
25none
 
 
after_TSS
16
58
27.5
10.6
2.57
4.17
0
0.0015
GO:0006959 humoral immune response
26none
 
 
at_TSS
15
144
10.4
4.9
2.08
3.001
0.0026
0.0579
GO:0005529 sugar binding
27none
 
 
at_TSS
13
97
13.4
4.9
2.68
3.813
0.0001
0.0167
GO:0005792
28none
 
yes
after_TSS
13
128
10.1
2.8
3.54
4.967
0
0
GO:0007389 pattern specification
29none
 
 
at_TSS
13
90
14.4
4.9
2.88
4.127
0
0.0014
GO:0004497 monooxygenase activity
30none
 
yes
before_TSS
12
128
9.3
4.3
2.16
2.826
0.0047
0.0297
GO:0007389 pattern specification
31none
 
 
at_TSS
11
97
11.3
4.9
2.26
2.877
0.004
0.0816
GO:0005179 hormone activity
32none
 
 
after_TSS
11
40
27.5
10.6
2.57
3.442
0.0005
0.0422
GO:0007606 sensory perception of chemical stimulus
33none
 
 
after_TSS
11
37
29.7
10.6
2.77
3.75
0.0001
0.0129
GO:0007608 perception of smell
34none
 
 
after_TSS
11
28
39.2
10.6
3.67
4.898
0
0.0001
GO:0004984 olfactory receptor activity
35none
 
 
after_TSS
10
33
30.3
10.6
2.83
3.647
0.0002
0.0485
GO:0016526 G-protein coupled receptor activity, unknown ligand
36none
 
 
at_TSS
10
76
13.1
4.9
2.63
3.274
0.001
0.0776
GO:0007156 homophilic cell adhesion
37none
 
 
at_TSS
10
77
12.9
4.9
2.59
3.226
0.0012
0.0656
GO:0004867 serine-type endopeptidase inhibitor activity
38MIT_046
 
 
before_TSS
11
219
5
1.1
4.46
5.524
0
0.0014
GO:0006519 amino acid and derivative metabolism
39TF_CDC5
 
 
before_TSS
13
144
9
2.6
3.35
4.723
0
0.0071
GO:0005529 sugar binding
40TF_GATA
 
 
before_TSS
16
144
11.1
3
3.6
5.608
0
0.0004
GO:0005529 sugar binding
41TF_HMX
 
 
before_TSS
10
119
8.4
2
4.11
4.932
0
0.0175
GO:0007276 gametogenesis
42TF_POU3F
 
 
before_TSS
16
144
11.1
3.6
3.07
4.853
0
0.0047
GO:0005529 sugar binding
43TF_S8
 
 
before_TSS
11
86
12.7
3.5
3.57
4.616
0
0.0422
GO:0008135 translation factor activity, nucleic acid binding
44TF_S8
 
 
before_TSS
11
90
12.2
3.5
3.41
4.431
0
0.081
GO:0045182 translation regulator activity
45TF_XVENT
 
 
before_TSS
10
99
10.1
2.6
3.77
4.595
0
0.0623
GO:0016337 cell-cell adhesion