CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_COUP

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_COUP
TF_COUP alone
In pair
with
1GO:0009605 response to external stimulus
489
at_TSS
71
yes
 
2GO:0015399 primary active transporter activity
168
after_TSS
48
yes
 
3GO:0015077 monovalent inorganic cation transporter activity
138
after_TSS
40
yes
 
4GO:0015078 hydrogen ion transporter activity
133
after_TSS
38
yes
 
5GO:0006629 lipid metabolism
396
before_TSS
36
 
TF_AML,
6GO:0007600 sensory perception
196
at_TSS
30
yes
 
7GO:0009611 response to wounding
180
at_TSS
28
yes
MIT_024MAZ,
8GO:0008236 serine-type peptidase activity
158
at_TSS
25
yes
 
9GO:0006082 organic acid metabolism
350
before_TSS
19
 
MIT_041MEIS,
10GO:0019752 carboxylic acid metabolism
350
before_TSS
19
 
MIT_041MEIS,
11GO:0043492 ATPase activity, coupled to movement of substances
152
before_TSS
17
yes
 
12GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
152
before_TSS
17
yes
 
13GO:0042626 ATPase activity, coupled to transmembrane movement of substances
152
before_TSS
17
yes
 
14GO:0004263 chymotrypsin activity
90
at_TSS
17
yes
 
15GO:0004867 serine-type endopeptidase inhibitor activity
77
at_TSS
15
yes
 
16GO:0007389 pattern specification
128
before_TSS,after_TSS
13
yes
 
17GO:0005261 cation channel activity
198
after_TSS
12
 
TF_RFX,
18GO:0006066 alcohol metabolism
164
before_TSS
12
 
TF_GR,
19GO:0006333 chromatin assembly or disassembly
121
before_TSS
11
 
TF_CART,
20GO:0006818 hydrogen transport
80
before_TSS
11
yes
 
21GO:0006752 group transfer coenzyme metabolism
75
before_TSS
11
yes
 
22GO:0043037 translation
128
before_TSS
11
 
TF_CHX,
23GO:0051186 cofactor metabolism
181
after_TSS
11
 
ADD_LRH,
24GO:0015992 proton transport
80
before_TSS
11
yes
 
25GO:0031497 chromatin assembly
95
before_TSS
10
 
TF_CART,
26GO:0006461 protein complex assembly
123
before_TSS
10
 
TF_CART,
27GO:0006334 nucleosome assembly
86
before_TSS
10
 
TF_CART,
28GO:0016741 transferase activity, transferring one-carbon groups
101
before_TSS
10
 
TF_RP58,
29GO:0006732 coenzyme metabolism
159
after_TSS
10
 
ADD_LRH,
30GO:0008168 methyltransferase activity
98
before_TSS
10
 
TF_RP58,

Pairs of TF_COUP binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_CART
before_TSS
4
GO:0006333 chromatin assembly or disassembly
11
121
2ADD_LRH
after_TSS
2
GO:0051186 cofactor metabolism
11
181
3MIT_041MEIS
before_TSS
2
GO:0019752 carboxylic acid metabolism
19
350
4TF_RP58
before_TSS
2
GO:0016741 transferase activity, transferring one-carbon groups
10
101
5TF_CHX
before_TSS
1
GO:0043037 translation
11
128
6TF_RFX
after_TSS
1
GO:0005261 cation channel activity
12
198
7MIT_024MAZ
at_TSS
1
GO:0009611 response to wounding
11
180
8TF_GR
before_TSS
1
GO:0006066 alcohol metabolism
12
164
9TF_AML
before_TSS
1
GO:0006629 lipid metabolism
36
396

Details on Gene Ontology terms for targets of TF_COUP

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
71
489
14.5
9.2
1.56
4.069
0
0.0009
GO:0009605 response to external stimulus
2none
 
 
at_TSS
57
356
16
9.2
1.72
4.436
0
0.0003
GO:0005576
3none
 
 
after_TSS
48
168
28.5
17.4
1.63
3.803
0.0001
0.0058
GO:0015399 primary active transporter activity
4none
 
 
after_TSS
40
138
28.9
17.4
1.65
3.571
0.0003
0.013
GO:0015077 monovalent inorganic cation transporter activity
5none
 
 
after_TSS
38
133
28.5
17.4
1.63
3.378
0.0007
0.0205
GO:0015078 hydrogen ion transporter activity
6none
 
 
at_TSS
30
196
15.3
9.2
1.64
2.926
0.0034
0.0628
GO:0007600 sensory perception
7none
 
 
at_TSS
28
180
15.5
9.2
1.67
2.919
0.0035
0.0918
GO:0009611 response to wounding
8none
 
 
at_TSS
25
158
15.8
9.2
1.7
2.849
0.0043
0.0844
GO:0008236 serine-type peptidase activity
9none
 
yes
before_TSS
23
302
7.6
4.8
1.58
2.317
0.0205
0.0625
GO:0005667
10none
 
yes
before_TSS
17
152
11.1
4.8
2.32
3.704
0.0002
0.0776
GO:0043492 ATPase activity, coupled to movement of substances
11none
 
yes
before_TSS
17
152
11.1
4.8
2.32
3.704
0.0002
0.0776
GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
12none
 
yes
before_TSS
17
152
11.1
4.8
2.32
3.704
0.0002
0.0776
GO:0042626 ATPase activity, coupled to transmembrane movement of substances
13none
 
 
at_TSS
17
90
18.8
9.2
2.03
3.15
0.0016
0.0314
GO:0004263 chymotrypsin activity
14none
 
 
at_TSS
15
77
19.4
9.2
2.09
3.091
0.0019
0.0912
GO:0004867 serine-type endopeptidase inhibitor activity
15none
 
yes
after_TSS
13
128
10.1
4.7
2.13
2.876
0.004
0.035
GO:0007389 pattern specification
16none
 
yes
before_TSS
13
128
10.1
4.8
2.11
2.849
0.0043
0.0281
GO:0007389 pattern specification
17none
 
yes
before_TSS
11
80
13.7
4.8
2.86
3.756
0.0001
0.0631
GO:0006818 hydrogen transport
18none
 
yes
before_TSS
11
75
14.6
4.8
3.05
4.009
0
0.0223
GO:0006752 group transfer coenzyme metabolism
19none
 
yes
before_TSS
11
80
13.7
4.8
2.86
3.756
0.0001
0.0631
GO:0015992 proton transport
20ADD_LRH
 
 
after_TSS
11
181
6
1.8
3.32
4.304
0
0.0659
GO:0051186 cofactor metabolism
21ADD_LRH
 
 
after_TSS
10
159
6.2
1.8
3.44
4.231
0
0.0837
GO:0006732 coenzyme metabolism
22MIT_024MAZ
 
 
at_TSS
11
180
6.1
1.5
3.85
4.894
0
0.0213
GO:0009611 response to wounding
23MIT_041MEIS
 
 
before_TSS
19
350
5.4
2
2.68
4.588
0
0.0241
GO:0006082 organic acid metabolism
24MIT_041MEIS
 
 
before_TSS
19
350
5.4
2
2.68
4.588
0
0.0241
GO:0019752 carboxylic acid metabolism
25TF_AML
 
 
before_TSS
36
396
9
4.2
2.12
4.821
0
0.0154
GO:0006629 lipid metabolism
26TF_CART
 
 
before_TSS
11
121
9
2.7
3.34
4.332
0
0.0058
GO:0006333 chromatin assembly or disassembly
27TF_CART
 
 
before_TSS
10
123
8.1
2.7
2.99
3.709
0.0002
0.0743
GO:0006461 protein complex assembly
28TF_CART
 
 
before_TSS
10
86
11.6
2.7
4.27
5.098
0
0.0001
GO:0006334 nucleosome assembly
29TF_CART
 
 
before_TSS
10
95
10.5
2.7
3.87
4.698
0
0.001
GO:0031497 chromatin assembly
30TF_CHX
 
 
before_TSS
11
128
8.5
2.3
3.7
4.736
0
0.0471
GO:0043037 translation
31TF_GR
 
 
before_TSS
12
164
7.3
2.1
3.45
4.661
0
0.0679
GO:0006066 alcohol metabolism
32TF_RFX
 
 
after_TSS
12
198
6
1.5
3.92
5.194
0
0.0088
GO:0005261 cation channel activity
33TF_RP58
 
 
before_TSS
10
101
9.9
2.3
4.2
5.022
0
0.022
GO:0016741 transferase activity, transferring one-carbon groups
34TF_RP58
 
 
before_TSS
10
98
10.2
2.3
4.33
5.145
0
0.0115
GO:0008168 methyltransferase activity