CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_E4BP4

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_E4BP4
TF_E4BP4 alone
In pair
with
1GO:0009605 response to external stimulus
489
after_TSS
67
yes
 
2GO:0030528 transcription regulator activity
941
before_TSS
57
yes
 
3GO:0003700 transcription factor activity
719
before_TSS
44
yes
 
4GO:0008026 ATP-dependent helicase activity
86
before_TSS
41
yes
 
5GO:0009607 response to biotic stimulus
483
at_TSS
39
yes
 
6GO:0009887 organ morphogenesis
674
before_TSS
38
yes
 
7GO:0006952 defense response
463
at_TSS
38
yes
 
8GO:0043207 response to external biotic stimulus
237
after_TSS
35
yes
 
9GO:0006955 immune response
379
at_TSS
32
yes
 
10GO:0009613 response to pest, pathogen or parasite
221
before_TSS,after_TSS
32
yes
TF_SREBP1,
11GO:0007600 sensory perception
196
after_TSS
28
yes
 
12GO:0004857 enzyme inhibitor activity
155
after_TSS
27
yes
 
13GO:0004866 endopeptidase inhibitor activity
112
after_TSS
19
yes
 
14GO:0030414 protease inhibitor activity
112
after_TSS
19
yes
 
15GO:0007399 nervous system development
301
before_TSS
19
yes
 
16GO:0016853 isomerase activity
118
before_TSS
17
 
TF_AML,
17GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
after_TSS
16
yes
 
18GO:0008380 RNA splicing
154
before_TSS
16
 
TF_NFY, ADD_LRH,
19GO:0004497 monooxygenase activity
90
after_TSS
16
yes
 
20GO:0000398 nuclear mRNA splicing, via spliceosome
149
before_TSS
15
 
ADD_LRH,
21GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
149
before_TSS
15
 
ADD_LRH,
22GO:0000375 RNA splicing, via transesterification reactions
149
before_TSS
15
 
ADD_LRH,
23GO:0006260 DNA replication
90
before_TSS
14
 
TF_POLYA,
24GO:0048468 cell development
162
before_TSS
13
yes
 
25GO:0005179 hormone activity
97
before_TSS
12
 
TF_TST,
26GO:0007389 pattern specification
128
before_TSS
12
yes
 
27GO:0001614 purinergic nucleotide receptor activity
53
after_TSS
11
yes
 
28GO:0001608 nucleotide receptor activity, G-protein coupled
53
after_TSS
11
yes
 
29GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
53
after_TSS
11
yes
 
30GO:0016502 nucleotide receptor activity
53
after_TSS
11
yes
 

Pairs of TF_E4BP4 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1ADD_LRH
before_TSS
4
GO:0008380 RNA splicing
16
154
2TF_NFY
before_TSS
1
GO:0008380 RNA splicing
13
154
3TF_SREBP1
before_TSS
1
GO:0009613 response to pest, pathogen or parasite
16
221
4TF_POLYA
before_TSS
1
GO:0006260 DNA replication
14
90
5TF_TST
before_TSS
1
GO:0005179 hormone activity
12
97
6TF_AML
before_TSS
1
GO:0016853 isomerase activity
17
118

Details on Gene Ontology terms for targets of TF_E4BP4

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
after_TSS
67
489
13.7
8.7
1.57
3.988
0
0.0009
GO:0009605 response to external stimulus
2none
 
yes
before_TSS
57
941
6
3.7
1.62
3.912
0
0.0003
GO:0030528 transcription regulator activity
3none
 
yes
before_TSS
44
719
6.1
3.7
1.63
3.477
0.0005
0.0018
GO:0003700 transcription factor activity
4none
 
 
before_TSS
41
86
47.6
30.3
1.57
3.509
0.0004
0.0274
GO:0008026 ATP-dependent helicase activity
5none
 
 
at_TSS
39
483
8
5.2
1.54
2.865
0.0041
0.0263
GO:0009607 response to biotic stimulus
6none
 
 
at_TSS
38
463
8.2
5.2
1.56
2.934
0.0033
0.0226
GO:0006952 defense response
7none
 
yes
before_TSS
38
674
5.6
3.7
1.5
2.681
0.0073
0.022
GO:0009887 organ morphogenesis
8none
 
 
after_TSS
35
237
14.7
8.7
1.69
3.335
0.0008
0.0135
GO:0043207 response to external biotic stimulus
9none
 
 
at_TSS
33
356
9.2
5.2
1.77
3.474
0.0005
0.0072
GO:0005576
10none
 
 
at_TSS
32
379
8.4
5.2
1.61
2.854
0.0043
0.0329
GO:0006955 immune response
11none
 
 
after_TSS
32
221
14.4
8.7
1.66
3.065
0.0021
0.0227
GO:0009613 response to pest, pathogen or parasite
12none
 
 
after_TSS
28
196
14.2
8.7
1.63
2.786
0.0053
0.0673
GO:0007600 sensory perception
13none
 
 
after_TSS
27
155
17.4
8.7
1.99
3.865
0.0001
0.0067
GO:0004857 enzyme inhibitor activity
14none
 
 
after_TSS
19
112
16.9
8.7
1.94
3.108
0.0018
0.0405
GO:0004866 endopeptidase inhibitor activity
15none
 
 
after_TSS
19
112
16.9
8.7
1.94
3.108
0.0018
0.0405
GO:0030414 protease inhibitor activity
16none
 
yes
before_TSS
19
301
6.3
3.7
1.69
2.388
0.0169
0.0712
GO:0007399 nervous system development
17none
 
 
after_TSS
16
91
17.5
8.7
2.01
3.009
0.0026
0.0872
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
18none
 
 
after_TSS
16
90
17.7
8.7
2.03
3.058
0.0022
0.0339
GO:0004497 monooxygenase activity
19none
 
yes
before_TSS
13
162
8
3.7
2.14
2.899
0.0037
0.0526
GO:0048468 cell development
20none
 
yes
before_TSS
12
128
9.3
3.7
2.51
3.383
0.0007
0.0067
GO:0007389 pattern specification
21none
 
 
after_TSS
11
53
20.7
8.7
2.38
3.113
0.0018
0.0677
GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
22none
 
 
after_TSS
11
53
20.7
8.7
2.38
3.113
0.0018
0.0677
GO:0001614 purinergic nucleotide receptor activity
23none
 
 
after_TSS
11
53
20.7
8.7
2.38
3.113
0.0018
0.0677
GO:0001608 nucleotide receptor activity, G-protein coupled
24none
 
 
after_TSS
11
53
20.7
8.7
2.38
3.113
0.0018
0.0677
GO:0016502 nucleotide receptor activity
25ADD_LRH
 
 
before_TSS
16
154
10.3
3
3.39
5.319
0
0.0045
GO:0008380 RNA splicing
26ADD_LRH
 
 
before_TSS
15
149
10
3
3.29
5.001
0
0.0061
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
27ADD_LRH
 
 
before_TSS
15
149
10
3
3.29
5.001
0
0.0061
GO:0000398 nuclear mRNA splicing, via spliceosome
28ADD_LRH
 
 
before_TSS
15
149
10
3
3.29
5.001
0
0.0061
GO:0000375 RNA splicing, via transesterification reactions
29TF_AML
 
 
before_TSS
17
118
14.4
4.7
3.05
4.988
0
0.0263
GO:0016853 isomerase activity
30TF_NFY
 
 
before_TSS
13
154
8.4
2.5
3.34
4.718
0
0.0147
GO:0008380 RNA splicing
31TF_POLYA
 
 
before_TSS
14
90
15.5
3.8
4.09
5.853
0
0.0002
GO:0006260 DNA replication
32TF_SREBP1
 
 
before_TSS
16
221
7.2
2.3
3.03
4.768
0
0.0268
GO:0009613 response to pest, pathogen or parasite
33TF_TST
 
 
before_TSS
12
97
12.3
3.4
3.55
4.798
0
0.0115
GO:0005179 hormone activity