Gene Ontology terms for targets of TF

CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_ELK

No.	GO annotation	Total genes with GO	Location	Max no. of genes with TF_ELK	TF_ELK alone	In pair with
1	GO:0006412 protein biosynthesis	421	at_TSS,after_TSS	236	yes	many
2	GO:0016070 RNA metabolism	342	at_TSS,before_TSS,after_TSS	197	yes	many
3	GO:0044249 cellular biosynthesis	776	at_TSS,after_TSS	165	yes	MIT_012MYOD, TF_ETS,
4	GO:0006396 RNA processing	273	at_TSS,before_TSS,after_TSS	156	yes	many
5	GO:0019222 regulation of metabolism	1541	before_TSS	129		MIT_056PAX4,
6	GO:0009059 macromolecule biosynthesis	472	at_TSS,after_TSS	126	yes	TF_ATF1, TF_ATF6, TF_ARNT,
7	GO:0031323 regulation of cellular metabolism	1510	before_TSS	125		MIT_056PAX4,
8	GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism	1420	before_TSS	120		MIT_056PAX4,
9	GO:0016301 kinase activity	684	before_TSS	120	yes
10	GO:0003735 structural constituent of ribosome	172	at_TSS,after_TSS	120	yes	many
11	GO:0045449 regulation of transcription	1410	before_TSS	119		MIT_056PAX4,
12	GO:0006351 transcription, DNA-dependent	1383	before_TSS	115		MIT_056PAX4,
13	GO:0006355 regulation of transcription, DNA-dependent	1362	before_TSS	114		MIT_056PAX4,
14	GO:0005554 molecular function unknown	593	at_TSS	110		many
15	GO:0030554 adenyl nucleotide binding	1036	at_TSS	108		MIT_005NFY, TF_E2F, TF_NFY,
16	GO:0030528 transcription regulator activity	941	before_TSS,after_TSS	106		TF_AP2, TF_AP2A, MIT_056PAX4,
17	GO:0009058 biosynthesis	878	after_TSS	106		MIT_012MYOD, TF_EGR1,
18	GO:0005524 ATP binding	1011	at_TSS,before_TSS	105		many
19	GO:0003723 RNA binding	354	at_TSS,before_TSS,after_TSS	100	yes	many
20	GO:0016773 phosphotransferase activity, alcohol group as acceptor	553	before_TSS	98	yes
21	GO:0009719 response to endogenous stimulus	159	at_TSS,after_TSS	95	yes	many
22	GO:0008104 protein localization	508	at_TSS	94	yes	many
23	GO:0006974 response to DNA damage stimulus	156	at_TSS,after_TSS	93	yes	TF_ATF6, TF_ETS, MIT_045,
24	GO:0006259 DNA metabolism	427	at_TSS,before_TSS	93	yes	TF_SP1, TF_PBX,
25	GO:0016310 phosphorylation	549	before_TSS	92	yes
26	GO:0046907 intracellular transport	478	at_TSS	92	yes	many
27	GO:0045184 establishment of protein localization	492	at_TSS,after_TSS	90	yes	many
28	GO:0015031 protein transport	476	at_TSS,after_TSS	89	yes	many
29	GO:0003677 DNA binding	1509	after_TSS	85		TF_AP2, TF_AP2A,
30	GO:0004672 protein kinase activity	466	before_TSS	85	yes
31	GO:0006468 protein amino acid phosphorylation	476	before_TSS	84	yes
32	GO:0006281 DNA repair	133	at_TSS	83	yes	TF_CREB, TF_ETS,
33	GO:0000166 nucleotide binding	1315	at_TSS	82		MIT_005NFY,
34	GO:0004674 protein serine/threonine kinase activity	418	before_TSS	77	yes
35	GO:0043037 translation	128	at_TSS,after_TSS	75	yes	many
36	GO:0004713 protein-tyrosine kinase activity	381	before_TSS	70	yes
37	GO:0006996 organelle organization and biogenesis	645	at_TSS	69		many
38	GO:0016192 vesicle-mediated transport	228	at_TSS	69	yes
39	GO:0007049 cell cycle	443	before_TSS	67		TF_SP1, TF_ELK, TF_ETS,
40	GO:0006886 intracellular protein transport	350	at_TSS	67	yes	many
41	GO:0003700 transcription factor activity	719	before_TSS	64		MIT_056PAX4,
42	GO:0007028 cytoplasm organization and biogenesis	82	at_TSS	63	yes	many
43	GO:0016071 mRNA metabolism	202	at_TSS,before_TSS,after_TSS	62	yes	many
44	GO:0051082 unfolded protein binding	106	at_TSS	61	yes	many
45	GO:0004386 helicase activity	108	at_TSS,before_TSS,after_TSS	61	yes	many
46	GO:0042254 ribosome biogenesis and assembly	74	at_TSS,after_TSS	59	yes	many
47	GO:0006397 mRNA processing	189	at_TSS,before_TSS,after_TSS	57	yes	many
48	GO:0016043 cell organization and biogenesis	839	at_TSS	55		MIT_011GABP,
49	GO:0016779 nucleotidyltransferase activity	91	at_TSS	55	yes
50	GO:0007046 ribosome biogenesis	67	at_TSS	54	yes	many
51	GO:0008270 zinc ion binding	901	at_TSS,after_TSS	53		TF_AP2, MIT_015AP4,
52	GO:0006260 DNA replication	90	at_TSS	52	yes	many
53	GO:0045182 translation regulator activity	90	at_TSS,after_TSS	52	yes	many
54	GO:0019941 modification-dependent protein catabolism	94	at_TSS	51	yes
55	GO:0006399 tRNA metabolism	86	at_TSS	51	yes	many
56	GO:0006511 ubiquitin-dependent protein catabolism	94	at_TSS	51	yes
57	GO:0008026 ATP-dependent helicase activity	86	at_TSS,before_TSS,after_TSS	51	yes	many
58	GO:0008135 translation factor activity, nucleic acid binding	86	at_TSS,after_TSS	49	yes	many
59	GO:0000398 nuclear mRNA splicing, via spliceosome	149	at_TSS,before_TSS,after_TSS	48	yes	many
60	GO:0016567 protein ubiquitination	227	after_TSS	48	yes
61	GO:0008380 RNA splicing	154	at_TSS,before_TSS,after_TSS	48	yes	many
62	GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	149	at_TSS,before_TSS,after_TSS	48	yes	many
63	GO:0000375 RNA splicing, via transesterification reactions	149	at_TSS,before_TSS,after_TSS	48	yes	many
64	GO:0006605 protein targeting	141	at_TSS	46	yes
65	GO:0016817 hydrolase activity, acting on acid anhydrides	450	at_TSS	44		TF_E2F,
66	GO:0016462 pyrophosphatase activity	447	at_TSS	44		TF_E2F,
67	GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	450	at_TSS	44		TF_E2F,
68	GO:0017111 nucleoside-triphosphatase activity	429	at_TSS	43		TF_E2F,
69	GO:0016887 ATPase activity	280	at_TSS,after_TSS	42		many
70	GO:0009451 RNA modification	64	at_TSS	41	yes	many
71	GO:0046903 secretion	123	at_TSS	40	yes	many
72	GO:0006366 transcription from RNA polymerase II promoter	231	before_TSS	40	yes
73	GO:0042623 ATPase activity, coupled	256	at_TSS,after_TSS	37		TF_ATF6, TF_E2F,
74	GO:0006400 tRNA modification	57	at_TSS	37	yes	TF_RFX1,
75	GO:0016886 ligase activity, forming phosphoric ester bonds	64	at_TSS	37	yes	TF_RFX1,
76	GO:0003743 translation initiation factor activity	53	at_TSS,after_TSS	36	yes	many
77	GO:0051301 cell division	134	before_TSS	36	yes
78	GO:0006512 ubiquitin cycle	390	before_TSS	35		many
79	GO:0008134 transcription factor binding	110	after_TSS	35	yes
80	GO:0000910 cytokinesis	125	at_TSS,before_TSS	35	yes	TF_E2F,
81	GO:0045045 secretory pathway	101	at_TSS	34	yes	TF_HTF, TF_ATF6, TF_ARNT,
82	GO:0004812 tRNA ligase activity	55	at_TSS	33	yes	TF_RFX1, TF_AHR, TF_ETS,
83	GO:0008452 RNA ligase activity	55	at_TSS	33	yes	TF_RFX1, TF_AHR, TF_ETS,
84	GO:0016875 ligase activity, forming carbon-oxygen bonds	55	at_TSS	33	yes	TF_RFX1, TF_AHR, TF_ETS,
85	GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds	55	at_TSS	33	yes	TF_RFX1, TF_AHR, TF_ETS,
86	GO:0043038 amino acid activation	52	at_TSS	32	yes	TF_ETS,
87	GO:0043039 tRNA aminoacylation	52	at_TSS	32	yes	TF_ETS,
88	GO:0006418 tRNA aminoacylation for protein translation	52	at_TSS	32	yes	TF_ETS,
89	GO:0005386 carrier activity	394	after_TSS	31		TF_RORA, TF_ER,
90	GO:0007264 small GTPase mediated signal transduction	201	at_TSS	31		TF_SP1, MIT_070PAX3,
91	GO:0008565 protein transporter activity	120	at_TSS	30	yes	TF_HTF, TF_ATF6, TF_ARNT,
92	GO:0006913 nucleocytoplasmic transport	70	at_TSS	27	yes
93	GO:0004518 nuclease activity	108	at_TSS	26	yes	MIT_021,
94	GO:0007389 pattern specification	128	before_TSS	25	yes
95	GO:0006457 protein folding	163	at_TSS,after_TSS	25		many
96	GO:0016758 transferase activity, transferring hexosyl groups	109	before_TSS	25	yes
97	GO:0016072 rRNA metabolism	31	at_TSS,after_TSS	25	yes	many
98	GO:0008138 protein tyrosine/serine/threonine phosphatase activity	31	after_TSS	24	yes
99	GO:0051169 nuclear transport	63	at_TSS	24	yes
100	GO:0006364 rRNA processing	29	at_TSS	23	yes	many
101	GO:0003899 DNA-directed RNA polymerase activity	30	at_TSS	22	yes
102	GO:0007399 nervous system development	301	after_TSS	22		TF_AHR,
103	GO:0048193 Golgi vesicle transport	30	at_TSS	20	yes	many

Pairs of TF_ELK binding sites with other TFBS

No.	TFBS	Location	Total GO-s	Main GO annotation	N pairs for main GO	Total genes for main GO
1	TF_ETS	at_TSS,before_TSS	35	GO:0044249 cellular biosynthesis	111	776
2	TF_ELK	at_TSS,before_TSS,after_TSS	28	GO:0016070 RNA metabolism	85	342
3	TF_HTF	at_TSS,before_TSS,after_TSS	25	GO:0046907 intracellular transport	87	478
4	TF_ARNT	at_TSS,before_TSS,after_TSS	23	GO:0008104 protein localization	82	508
5	TF_ATF1	at_TSS,before_TSS,after_TSS	20	GO:0046907 intracellular transport	90	478
6	TF_GABP	at_TSS,after_TSS	19	GO:0003723 RNA binding	75	354
7	TF_ATF6	at_TSS,before_TSS,after_TSS	18	GO:0046907 intracellular transport	84	478
8	MIT_003ELK	at_TSS,after_TSS	18	GO:0006996 organelle organization and biogenesis	69	645
9	TF_CREB	at_TSS,after_TSS	15	GO:0008104 protein localization	94	508
10	TF_SP1	at_TSS,before_TSS	15	GO:0046907 intracellular transport	78	478
11	TF_RFX1	at_TSS,after_TSS	14	GO:0016071 mRNA metabolism	25	202
12	TF_E2F	at_TSS	13	GO:0030554 adenyl nucleotide binding	80	1036
13	TF_AHR	at_TSS,after_TSS	13	GO:0005554 molecular function unknown	110	593
14	MIT_006SP1	at_TSS,before_TSS	11	GO:0045184 establishment of protein localization	61	492
15	MIT_056PAX4	before_TSS	9	GO:0019222 regulation of metabolism	129	1541
16	TF_AP2	before_TSS,after_TSS	8	GO:0030528 transcription regulator activity	106	941
17	TF_AP2A	before_TSS,after_TSS	7	GO:0003677 DNA binding	85	1509
18	MIT_011GABP	at_TSS,after_TSS	7	GO:0016043 cell organization and biogenesis	55	839
19	MIT_020E4F1	at_TSS	6	GO:0006996 organelle organization and biogenesis	42	645
20	TF_RORA	after_TSS	6	GO:0005386 carrier activity	21	394
21	MIT_024MAZ	at_TSS,before_TSS,after_TSS	5	GO:0045184 establishment of protein localization	61	492
22	MIT_021	at_TSS	4	GO:0007028 cytoplasm organization and biogenesis	15	82
23	TF_MYB	before_TSS	4	GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	17	149
24	TF_NFY	at_TSS	3	GO:0030554 adenyl nucleotide binding	108	1036
25	TF_YY1	at_TSS,after_TSS	3	GO:0003735 structural constituent of ribosome	27	172
26	MIT_005NFY	at_TSS	3	GO:0000166 nucleotide binding	82	1315
27	TF_MYC	after_TSS	3	GO:0016887 ATPase activity	17	280
28	MIT_002MYC	after_TSS	3	GO:0016887 ATPase activity	14	280
29	MIT_045	at_TSS	2	GO:0009719 response to endogenous stimulus	10	159
30	TF_EGR1	at_TSS,after_TSS	2	GO:0009058 biosynthesis	69	878
31	MIT_070PAX3	at_TSS	2	GO:0007264 small GTPase mediated signal transduction	14	201
32	MIT_055NFAT	at_TSS	2	GO:0006457 protein folding	17	163
33	TF_NFKB	at_TSS	2	GO:0006260 DNA replication	12	90
34	MIT_012MYOD	after_TSS	2	GO:0009058 biosynthesis	106	878
35	TF_COMP	at_TSS	2	GO:0005554 molecular function unknown	38	593
36	TF_STAT	before_TSS	1	GO:0006512 ubiquitin cycle	35	390
37	MIT_081	after_TSS	1	GO:0045182 translation regulator activity	10	90
38	TF_PAX4	at_TSS	1	GO:0005554 molecular function unknown	34	593
39	MIT_022	at_TSS	1	GO:0006399 tRNA metabolism	11	86
40	MIT_092	after_TSS	1	GO:0006457 protein folding	11	163
41	TF_MRF2	before_TSS	1	GO:0042578 phosphoric ester hydrolase activity	16	222
42	MIT_048NFKB	at_TSS	1	GO:0003723 RNA binding	18	354
43	TF_CP2	before_TSS	1	GO:0035295 tube development	11	61
44	TF_ER	after_TSS	1	GO:0005386 carrier activity	31	394
45	MIT_068HSF	at_TSS	1	GO:0006457 protein folding	10	163
46	MIT_031	at_TSS	1	GO:0005554 molecular function unknown	40	593
47	MIT_015AP4	at_TSS	1	GO:0008270 zinc ion binding	53	901
48	TF_PBX	at_TSS	1	GO:0006259 DNA metabolism	22	427
49	TF_HSF	at_TSS	1	GO:0006457 protein folding	10	163
50	TF_TST	before_TSS	1	GO:0000279 M phase	13	122
51	MIT_106	at_TSS	1	GO:0003723 RNA binding	18	354
52	MIT_008	at_TSS	1	GO:0003735 structural constituent of ribosome	12	172
53	MIT_001NRF1	at_TSS	1	GO:0006996 organelle organization and biogenesis	44	645

Details on Gene Ontology terms for targets of TF_ELK

Total number of genes = 12103

No.	In pair with	Multi- ple	Conser- ved	Location	Frequency in list	U-clusters in list	Genes with TFBS in list, %	Genes with TFBS total, %	Ratio	z	p	FDR	GO annotation
1	none			at_TSS	236	421	56	36	1.55	8.718	0	0	GO:0006412 protein biosynthesis
2	none	yes	yes	at_TSS	205	2537	8	5.3	1.51	6.964	0	0	GO:0005634
3	none			at_TSS	197	342	57.6	36	1.59	8.435	0	0	GO:0016070 RNA metabolism
4	none	yes		at_TSS	165	776	21.2	13.5	1.57	6.54	0	0	GO:0044249 cellular biosynthesis
5	none			at_TSS	156	273	57.1	36	1.58	7.354	0	0	GO:0006396 RNA processing
6	none			at_TSS	127	183	69.3	36	1.92	9.478	0	0	GO:0030529
7	none	yes		at_TSS	126	472	26.6	13.5	1.97	8.556	0	0	GO:0009059 macromolecule biosynthesis
8	none	yes		at_TSS	123	421	29.2	13.5	2.16	9.603	0	0	GO:0006412 protein biosynthesis
9	none			before_TSS	122	183	66.6	42.7	1.55	6.577	0	0	GO:0030529
10	none			at_TSS	120	172	69.7	36	1.93	9.286	0	0	GO:0003735 structural constituent of ribosome
11	none		yes	before_TSS	120	684	17.5	11.1	1.57	5.473	0	0	GO:0016301 kinase activity
12	none	yes		at_TSS	109	342	31.8	13.5	2.36	10.084	0	0	GO:0016070 RNA metabolism
13	none	yes		after_TSS	100	354	28.2	14	2	7.779	0	0	GO:0003723 RNA binding
14	none	yes		at_TSS	99	354	27.9	13.5	2.07	8.082	0	0	GO:0003723 RNA binding
15	none		yes	before_TSS	98	553	17.7	11.1	1.58	5.029	0	0.0001	GO:0016773 phosphotransferase activity, alcohol group as acceptor
16	none			at_TSS	95	159	59.7	36	1.65	6.275	0	0	GO:0009719 response to endogenous stimulus
17	none			at_TSS	95	136	69.8	36	1.93	8.266	0	0	GO:0005840
18	none			at_TSS	93	156	59.6	36	1.65	6.179	0	0	GO:0006974 response to DNA damage stimulus
19	none	yes		at_TSS	93	427	21.7	13.5	1.61	5.096	0	0	GO:0006259 DNA metabolism
20	none	yes		after_TSS	93	342	27.1	14	1.93	7.073	0	0	GO:0016070 RNA metabolism
21	none		yes	before_TSS	92	549	16.7	11.1	1.5	4.276	0	0.0069	GO:0016310 phosphorylation
22	none	yes		after_TSS	92	421	21.8	14	1.55	4.667	0	0.0011	GO:0006412 protein biosynthesis
23	none	yes		before_TSS	87	354	24.5	14.9	1.63	5.129	0	0	GO:0003723 RNA binding
24	none		yes	before_TSS	85	466	18.2	11.1	1.63	4.962	0	0.0002	GO:0004672 protein kinase activity
25	none		yes	before_TSS	84	476	17.6	11.1	1.58	4.598	0	0.0015	GO:0006468 protein amino acid phosphorylation
26	none	yes		at_TSS	84	273	30.7	13.5	2.27	8.444	0	0	GO:0006396 RNA processing
27	none			at_TSS	83	133	62.4	36	1.73	6.374	0	0	GO:0006281 DNA repair
28	none	yes		after_TSS	77	273	28.2	14	2	6.787	0	0	GO:0006396 RNA processing
29	none		yes	before_TSS	77	418	18.4	11.1	1.65	4.809	0	0.0005	GO:0004674 protein serine/threonine kinase activity
30	none	yes		before_TSS	77	342	22.5	14.9	1.5	3.955	0	0.007	GO:0016070 RNA metabolism
31	none			at_TSS	75	128	58.5	36	1.62	5.349	0	0	GO:0043037 translation
32	none		yes	before_TSS	70	381	18.3	11.1	1.64	4.554	0	0.0019	GO:0004713 protein-tyrosine kinase activity
33	none		yes	at_TSS	69	228	30.2	20.1	1.5	3.857	0.0001	0.021	GO:0016192 vesicle-mediated transport
34	none	yes		at_TSS	67	288	23.2	13.5	1.72	4.906	0	0.0003	GO:0005794
35	none	yes		at_TSS	66	172	38.3	13.5	2.84	9.613	0	0	GO:0003735 structural constituent of ribosome
36	none			at_TSS	63	82	76.8	36	2.13	7.724	0	0	GO:0007028 cytoplasm organization and biogenesis
37	none	yes		after_TSS	62	202	30.6	14	2.18	6.846	0	0	GO:0016071 mRNA metabolism
38	none	yes		before_TSS	62	273	22.7	14.9	1.51	3.615	0.0003	0.0183	GO:0006396 RNA processing
39	none			at_TSS	61	108	56.4	36	1.56	4.45	0	0.0015	GO:0004386 helicase activity
40	none			at_TSS	61	106	57.5	36	1.59	4.638	0	0.0003	GO:0051082 unfolded protein binding
41	none			at_TSS	59	74	79.7	36	2.21	7.857	0	0	GO:0042254 ribosome biogenesis and assembly
42	none	yes		at_TSS	59	202	29.2	13.5	2.16	6.587	0	0	GO:0016071 mRNA metabolism
43	none	yes		after_TSS	57	189	30.1	14	2.14	6.405	0	0	GO:0006397 mRNA processing
44	none			at_TSS	55	91	60.4	36	1.67	4.871	0	0.0001	GO:0016779 nucleotidyltransferase activity
45	none	yes		after_TSS	54	183	29.5	14	2.09	6.046	0	0	GO:0030529
46	none	yes	yes	at_TSS	54	613	8.8	5.3	1.65	3.948	0	0.0288	GO:0005622
47	none			at_TSS	54	67	80.5	36	2.23	7.622	0	0	GO:0007046 ribosome biogenesis
48	none	yes		at_TSS	53	189	28	13.5	2.07	5.895	0	0	GO:0006397 mRNA processing
49	none			at_TSS	52	90	57.7	36	1.6	4.316	0	0.0008	GO:0006260 DNA replication
50	none			at_TSS	52	90	57.7	36	1.6	4.316	0	0.0004	GO:0045182 translation regulator activity
51	none			at_TSS	51	86	59.3	36	1.64	4.514	0	0.0011	GO:0006399 tRNA metabolism
52	none			at_TSS	51	94	54.2	36	1.5	3.698	0.0002	0.0159	GO:0019941 modification-dependent protein catabolism
53	none			at_TSS	51	86	59.3	36	1.64	4.514	0	0.0007	GO:0008026 ATP-dependent helicase activity
54	none			at_TSS	51	94	54.2	36	1.5	3.698	0.0002	0.0159	GO:0006511 ubiquitin-dependent protein catabolism
55	none			at_TSS	49	86	56.9	36	1.58	4.063	0	0.0011	GO:0008135 translation factor activity, nucleic acid binding
56	none	yes		after_TSS	48	227	21.1	14	1.5	3.089	0.002	0.0735	GO:0016567 protein ubiquitination
57	none	yes	yes	at_TSS	48	478	10	5.3	1.88	4.691	0	0.0009	GO:0046907 intracellular transport
58	none	yes		after_TSS	48	149	32.2	14	2.28	6.404	0	0	GO:0000375 RNA splicing, via transesterification reactions
59	none	yes		after_TSS	48	149	32.2	14	2.28	6.404	0	0	GO:0000398 nuclear mRNA splicing, via spliceosome
60	none	yes		before_TSS	48	202	23.7	14.9	1.58	3.523	0.0004	0.0312	GO:0016071 mRNA metabolism
61	none	yes		after_TSS	48	154	31.1	14	2.21	6.136	0	0	GO:0008380 RNA splicing
62	none	yes		after_TSS	48	149	32.2	14	2.28	6.404	0	0	GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
63	none	yes	yes	at_TSS	47	508	9.2	5.3	1.73	4.032	0	0.0067	GO:0008104 protein localization
64	none	yes	yes	at_TSS	46	476	9.6	5.3	1.81	4.306	0	0.002	GO:0015031 protein transport
65	none		yes	at_TSS	46	141	32.6	20.1	1.62	3.725	0.0001	0.0714	GO:0006605 protein targeting
66	none	yes	yes	at_TSS	46	492	9.3	5.3	1.75	4.064	0	0.0058	GO:0045184 establishment of protein localization
67	none	yes		at_TSS	46	128	35.9	13.5	2.66	7.467	0	0	GO:0043037 translation
68	none	yes		at_TSS	44	154	28.5	13.5	2.11	5.507	0	0	GO:0008380 RNA splicing
69	none	yes		before_TSS	44	189	23.2	14.9	1.55	3.218	0.0012	0.059	GO:0006397 mRNA processing
70	none	yes		at_TSS	42	149	28.1	13.5	2.08	5.278	0	0	GO:0000398 nuclear mRNA splicing, via spliceosome
71	none	yes		at_TSS	42	149	28.1	13.5	2.08	5.278	0	0	GO:0000375 RNA splicing, via transesterification reactions
72	none	yes		at_TSS	42	149	28.1	13.5	2.08	5.278	0	0	GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
73	none			at_TSS	41	64	64	36	1.77	4.686	0	0.0003	GO:0009451 RNA modification
74	none			after_TSS	41	54	75.9	44	1.72	4.734	0	0.0002	GO:0005681
75	none		yes	before_TSS	40	231	17.3	11.1	1.55	3.008	0.0026	0.0534	GO:0006366 transcription from RNA polymerase II promoter
76	none		yes	at_TSS	40	123	32.5	20.1	1.61	3.448	0.0005	0.0516	GO:0046903 secretion
77	none	yes		before_TSS	39	154	25.3	14.9	1.68	3.616	0.0002	0.0156	GO:0008380 RNA splicing
78	none	yes		before_TSS	38	149	25.5	14.9	1.7	3.618	0.0002	0.0181	GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
79	none	yes		before_TSS	38	149	25.5	14.9	1.7	3.618	0.0002	0.0181	GO:0000398 nuclear mRNA splicing, via spliceosome
80	none	yes		before_TSS	38	149	25.5	14.9	1.7	3.618	0.0002	0.0181	GO:0000375 RNA splicing, via transesterification reactions
81	none	yes	yes	at_TSS	38	350	10.8	5.3	2.04	4.682	0	0.0005	GO:0006886 intracellular protein transport
82	none			at_TSS	37	58	63.7	36	1.77	4.417	0	0.0018	GO:0005730
83	none			at_TSS	37	57	64.9	36	1.8	4.555	0	0.0006	GO:0006400 tRNA modification
84	none			at_TSS	37	64	57.8	36	1.6	3.641	0.0002	0.0248	GO:0016886 ligase activity, forming phosphoric ester bonds
85	none			at_TSS	36	54	66.6	36	1.85	4.702	0	0.0004	GO:0005681
86	none	yes		at_TSS	36	82	43.9	13.5	3.25	8.083	0	0	GO:0007028 cytoplasm organization and biogenesis
87	none	yes		before_TSS	36	134	26.8	14.9	1.79	3.873	0.0001	0.0393	GO:0051301 cell division
88	none			after_TSS	36	53	67.9	44	1.54	3.514	0.0004	0.0403	GO:0003743 translation initiation factor activity
89	none	yes		before_TSS	35	125	28	14.9	1.86	4.096	0	0.0153	GO:0000910 cytokinesis
90	none		yes	after_TSS	35	110	31.8	19.3	1.64	3.341	0.0008	0.0611	GO:0008134 transcription factor binding
91	none	yes	yes	at_TSS	34	183	18.5	5.3	3.49	8.051	0	0	GO:0030529
92	none	yes		at_TSS	34	74	45.9	13.5	3.4	8.192	0	0	GO:0042254 ribosome biogenesis and assembly
93	none		yes	at_TSS	34	101	33.6	20.1	1.67	3.409	0.0006	0.0596	GO:0045045 secretory pathway
94	none	yes		before_TSS	34	108	31.4	14.9	2.1	4.823	0	0.0002	GO:0004386 helicase activity
95	none			at_TSS	33	55	60	36	1.66	3.713	0.0002	0.0249	GO:0008452 RNA ligase activity
96	none			at_TSS	33	55	60	36	1.66	3.713	0.0002	0.0249	GO:0016875 ligase activity, forming carbon-oxygen bonds
97	none			at_TSS	33	55	60	36	1.66	3.713	0.0002	0.0249	GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds
98	none			at_TSS	33	55	60	36	1.66	3.713	0.0002	0.0249	GO:0004812 tRNA ligase activity
99	none			at_TSS	32	52	61.5	36	1.7	3.842	0.0001	0.0111	GO:0043039 tRNA aminoacylation
100	none			at_TSS	32	52	61.5	36	1.7	3.842	0.0001	0.0111	GO:0006418 tRNA aminoacylation for protein translation
101	none	yes		at_TSS	32	67	47.7	13.5	3.53	8.228	0	0	GO:0007046 ribosome biogenesis
102	none			at_TSS	32	52	61.5	36	1.7	3.842	0.0001	0.0111	GO:0043038 amino acid activation
103	none			at_TSS	32	53	60.3	36	1.67	3.702	0.0002	0.0391	GO:0019866
104	none	yes		at_TSS	31	90	34.4	13.5	2.55	5.835	0	0	GO:0045182 translation regulator activity
105	none	yes		at_TSS	30	86	34.8	13.5	2.58	5.823	0	0	GO:0008135 translation factor activity, nucleic acid binding
106	none	yes		at_TSS	30	120	25	13.5	1.85	3.704	0.0002	0.0194	GO:0008565 protein transporter activity
107	none	yes		at_TSS	30	86	34.8	13.5	2.58	5.823	0	0	GO:0006399 tRNA metabolism
108	none	yes		at_TSS	29	90	32.2	13.5	2.38	5.216	0	0	GO:0006260 DNA replication
109	none	yes		at_TSS	27	86	31.3	13.5	2.32	4.873	0	0.0002	GO:0008026 ATP-dependent helicase activity
110	none		yes	at_TSS	27	70	38.5	20.1	1.91	3.862	0.0001	0.0411	GO:0006913 nucleocytoplasmic transport
111	none	yes		after_TSS	27	90	30	14	2.13	4.358	0	0.0024	GO:0045182 translation regulator activity
112	none	yes		after_TSS	26	86	30.2	14	2.14	4.322	0	0.0028	GO:0008135 translation factor activity, nucleic acid binding
113	none	yes		at_TSS	26	108	24	13.5	1.78	3.229	0.0012	0.0757	GO:0004518 nuclease activity
114	none		yes	before_TSS	25	128	19.5	11.1	1.75	3.03	0.0024	0.0186	GO:0007389 pattern specification
115	none	yes		before_TSS	25	86	29	14.9	1.93	3.671	0.0002	0.0176	GO:0008026 ATP-dependent helicase activity
116	none			at_TSS	25	31	80.6	36	2.23	5.182	0	0	GO:0016072 rRNA metabolism
117	none		yes	before_TSS	25	109	22.9	11.1	2.05	3.928	0	0.0313	GO:0016758 transferase activity, transferring hexosyl groups
118	none	yes		at_TSS	24	54	44.4	13.5	3.29	6.668	0	0	GO:0005681
119	none	yes		at_TSS	24	64	37.5	13.5	2.77	5.632	0	0	GO:0009451 RNA modification
120	none			after_TSS	24	31	77.4	44	1.75	3.751	0.0001	0.0644	GO:0008138 protein tyrosine/serine/threonine phosphatase activity
121	none		yes	at_TSS	24	63	38	20.1	1.89	3.568	0.0003	0.0438	GO:0051169 nuclear transport
122	none			at_TSS	23	29	79.3	36	2.2	4.862	0	0.0001	GO:0006364 rRNA processing
123	none			at_TSS	22	30	73.3	36	2.03	4.262	0	0.0018	GO:0003899 DNA-directed RNA polymerase activity
124	none	yes		at_TSS	21	57	36.8	13.5	2.72	5.168	0	0	GO:0006400 tRNA modification
125	none			at_TSS	21	23	91.3	36	2.53	5.528	0	0	GO:0005830
126	none	yes	yes	at_TSS	20	136	14.7	5.3	2.76	4.903	0	0.0003	GO:0005840
127	none			at_TSS	20	30	66.6	36	1.85	3.501	0.0004	0.0848	GO:0048193 Golgi vesicle transport
128	none	yes		after_TSS	20	74	27	14	1.91	3.212	0.0013	0.0964	GO:0042254 ribosome biogenesis and assembly
129	none	yes		after_TSS	20	54	37	14	2.63	4.861	0	0.0002	GO:0005681
130	none	yes		at_TSS	20	64	31.2	13.5	2.31	4.165	0	0.0113	GO:0016886 ligase activity, forming phosphoric ester bonds
131	none	yes		at_TSS	19	52	36.5	13.5	2.7	4.871	0	0.0004	GO:0006418 tRNA aminoacylation for protein translation
132	none	yes		at_TSS	19	53	35.8	13.5	2.65	4.771	0	0.0002	GO:0003743 translation initiation factor activity
133	none	yes		at_TSS	19	55	34.5	13.5	2.55	4.577	0	0.0017	GO:0016875 ligase activity, forming carbon-oxygen bonds
134	none	yes		at_TSS	19	55	34.5	13.5	2.55	4.577	0	0.0017	GO:0004812 tRNA ligase activity
135	none	yes		at_TSS	19	52	36.5	13.5	2.7	4.871	0	0.0004	GO:0043038 amino acid activation
136	none			at_TSS	19	28	67.8	36	1.88	3.513	0.0004	0.0405	GO:0000139
137	none	yes		at_TSS	19	55	34.5	13.5	2.55	4.577	0	0.0017	GO:0008452 RNA ligase activity
138	none	yes		at_TSS	19	52	36.5	13.5	2.7	4.871	0	0.0004	GO:0043039 tRNA aminoacylation
139	none	yes		at_TSS	19	55	34.5	13.5	2.55	4.577	0	0.0017	GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds
140	none	yes		after_TSS	18	53	33.9	14	2.41	4.17	0	0.0111	GO:0003743 translation initiation factor activity
141	none	yes		before_TSS	18	54	33.3	14.9	2.22	3.784	0.0001	0.0188	GO:0005681
142	none			at_TSS	18	26	69.2	36	1.92	3.531	0.0004	0.0252	GO:0051168 nuclear export
143	none			at_TSS	17	24	70.8	36	1.96	3.556	0.0003	0.0459	GO:0008094 DNA-dependent ATPase activity
144	none			at_TSS	17	24	70.8	36	1.96	3.556	0.0003	0.0689	GO:0007059 chromosome segregation
145	none	yes	yes	at_TSS	16	123	13	5.3	2.44	3.817	0.0001	0.0164	GO:0046903 secretion
146	none	yes	yes	at_TSS	15	101	14.8	5.3	2.79	4.285	0	0.0033	GO:0045045 secretory pathway
147	none	yes		at_TSS	15	28	53.5	13.5	3.96	6.211	0	0	GO:0000139
148	none		yes	at_TSS	14	23	60.8	20.1	3.02	4.879	0	0.0003	GO:0005802
149	none		yes	before_TSS	14	53	26.4	11.1	2.36	3.539	0.0004	0.0245	GO:0016563 transcriptional activator activity
150	none	yes		at_TSS	14	30	46.6	13.5	3.45	5.322	0	0	GO:0048193 Golgi vesicle transport
151	none	yes		at_TSS	13	29	44.8	13.5	3.32	4.942	0	0	GO:0006364 rRNA processing
152	none	yes		at_TSS	13	36	36.1	13.5	2.67	3.975	0	0.0064	GO:0006413 translational initiation
153	none	yes		at_TSS	12	32	37.5	13.5	2.77	3.977	0	0.0255	GO:0006445 regulation of translation
154	none		yes	at_TSS	11	21	52.3	20.1	2.6	3.69	0.0002	0.082	GO:0007369 gastrulation
155	none	yes		at_TSS	11	32	34.3	13.5	2.54	3.459	0.0005	0.0496	GO:0008033 tRNA processing
156	none	yes		at_TSS	11	24	45.8	13.5	3.39	4.639	0	0.0006	GO:0008094 DNA-dependent ATPase activity
157	none	yes		at_TSS	10	26	38.4	13.5	2.84	3.728	0.0001	0.0141	GO:0051168 nuclear export
158	MIT_001NRF1			at_TSS	44	645	6.8	3.6	1.87	4.426	0	0.0129	GO:0006996 organelle organization and biogenesis
159	MIT_002MYC			after_TSS	14	280	5	1.5	3.27	4.79	0	0.024	GO:0016887 ATPase activity
160	MIT_002MYC			after_TSS	11	98	11.2	1.5	7.34	7.855	0	0	GO:0008168 methyltransferase activity
161	MIT_002MYC			after_TSS	11	101	10.8	1.5	7.12	7.701	0	0	GO:0016741 transferase activity, transferring one-carbon groups
162	MIT_003ELK			at_TSS	69	645	10.6	6.6	1.6	4.194	0	0.0275	GO:0006996 organelle organization and biogenesis
163	MIT_003ELK			at_TSS	58	354	16.3	6.6	2.45	7.416	0	0	GO:0003723 RNA binding
164	MIT_003ELK			at_TSS	29	128	22.6	6.6	3.38	7.273	0	0	GO:0043037 translation
165	MIT_003ELK	yes		at_TSS	26	183	14.2	3.5	3.98	7.816	0	0	GO:0030529
166	MIT_003ELK			at_TSS	24	74	32.4	6.6	4.85	8.895	0	0	GO:0042254 ribosome biogenesis and assembly
167	MIT_003ELK			at_TSS	24	82	29.2	6.6	4.37	8.216	0	0	GO:0007028 cytoplasm organization and biogenesis
168	MIT_003ELK			at_TSS	24	154	15.5	6.6	2.33	4.45	0	0.0463	GO:0008380 RNA splicing
169	MIT_003ELK			at_TSS	22	67	32.8	6.6	4.91	8.594	0	0	GO:0007046 ribosome biogenesis
170	MIT_003ELK			at_TSS	19	90	21.1	6.6	3.15	5.5	0	0.0001	GO:0045182 translation regulator activity
171	MIT_003ELK			after_TSS	18	202	8.9	2.1	4.14	6.685	0	0	GO:0016071 mRNA metabolism
172	MIT_003ELK			at_TSS	18	86	20.9	6.6	3.13	5.308	0	0.0003	GO:0008135 translation factor activity, nucleic acid binding
173	MIT_003ELK			after_TSS	16	189	8.4	2.1	3.94	6.037	0	0	GO:0006397 mRNA processing
174	MIT_003ELK			after_TSS	14	149	9.3	2.1	4.37	6.139	0	0	GO:0000375 RNA splicing, via transesterification reactions
175	MIT_003ELK			after_TSS	14	149	9.3	2.1	4.37	6.139	0	0	GO:0000398 nuclear mRNA splicing, via spliceosome
176	MIT_003ELK			after_TSS	14	149	9.3	2.1	4.37	6.139	0	0	GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
177	MIT_003ELK			after_TSS	14	154	9	2.1	4.23	5.98	0	0	GO:0008380 RNA splicing
178	MIT_003ELK			at_TSS	12	53	22.6	6.6	3.38	4.661	0	0.0123	GO:0003743 translation initiation factor activity
179	MIT_003ELK			at_TSS	11	31	35.4	6.6	5.3	6.428	0	0	GO:0016072 rRNA metabolism
180	MIT_003ELK			at_TSS	10	29	34.4	6.6	5.15	6	0	0	GO:0006364 rRNA processing
181	MIT_003ELK			at_TSS	10	36	27.7	6.6	4.15	5.074	0	0.0056	GO:0006413 translational initiation
182	MIT_005NFY			at_TSS	82	1315	6.2	3.9	1.56	4.405	0	0.0653	GO:0000166 nucleotide binding
183	MIT_005NFY			at_TSS	74	1036	7.1	3.9	1.78	5.42	0	0.0008	GO:0030554 adenyl nucleotide binding
184	MIT_005NFY			at_TSS	72	1011	7.1	3.9	1.78	5.312	0	0.0015	GO:0005524 ATP binding
185	MIT_006SP1		yes	at_TSS	61	492	12.3	6.1	2.01	5.87	0	0	GO:0045184 establishment of protein localization
186	MIT_006SP1			before_TSS	57	354	16.1	8	2	5.653	0	0.0006	GO:0003723 RNA binding
187	MIT_006SP1		yes	at_TSS	56	478	11.7	6.1	1.9	5.149	0	0.0016	GO:0046907 intracellular transport
188	MIT_006SP1		yes	at_TSS	48	350	13.7	6.1	2.22	5.96	0	0	GO:0006886 intracellular protein transport
189	MIT_006SP1		yes	at_TSS	37	288	12.8	6.1	2.08	4.773	0	0.0098	GO:0005794
190	MIT_006SP1			at_TSS	35	108	32.4	16.5	1.96	4.46	0	0.0272	GO:0004386 helicase activity
191	MIT_006SP1	yes		before_TSS	15	149	10	3.2	3.05	4.657	0	0.0154	GO:0000398 nuclear mRNA splicing, via spliceosome
192	MIT_006SP1	yes		before_TSS	15	149	10	3.2	3.05	4.657	0	0.0154	GO:0000375 RNA splicing, via transesterification reactions
193	MIT_006SP1	yes		before_TSS	15	149	10	3.2	3.05	4.657	0	0.0154	GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
194	MIT_006SP1			at_TSS	15	30	50	16.5	3.02	4.94	0	0.0112	GO:0048193 Golgi vesicle transport
195	MIT_006SP1	yes		before_TSS	15	154	9.7	3.2	2.95	4.507	0	0.0284	GO:0008380 RNA splicing
196	MIT_006SP1			at_TSS	13	24	54.1	16.5	3.27	4.967	0	0.0293	GO:0008094 DNA-dependent ATPase activity
197	MIT_006SP1			at_TSS	13	28	46.4	16.5	2.8	4.263	0	0.0968	GO:0000139
198	MIT_008			at_TSS	12	172	6.9	0.6	10.42	10.218	0	0	GO:0003735 structural constituent of ribosome
199	MIT_008			at_TSS	11	136	8	0.6	12.08	10.671	0	0	GO:0005840
200	MIT_011GABP			at_TSS	55	839	6.5	3.8	1.69	4.203	0	0.0406	GO:0016043 cell organization and biogenesis
201	MIT_011GABP			at_TSS	49	645	7.5	3.8	1.96	5.066	0	0.001	GO:0006996 organelle organization and biogenesis
202	MIT_011GABP			after_TSS	15	273	5.4	1.1	4.75	6.779	0	0	GO:0006396 RNA processing
203	MIT_011GABP	yes		at_TSS	11	74	14.8	1.7	8.64	8.727	0	0	GO:0042254 ribosome biogenesis and assembly
204	MIT_011GABP	yes		at_TSS	11	82	13.4	1.7	7.8	8.176	0	0	GO:0007028 cytoplasm organization and biogenesis
205	MIT_011GABP			at_TSS	10	64	15.6	3.8	4.04	4.9	0	0.0051	GO:0009451 RNA modification
206	MIT_011GABP	yes		at_TSS	10	67	14.9	1.7	8.68	8.34	0	0	GO:0007046 ribosome biogenesis
207	MIT_012MYOD			after_TSS	106	878	12	7.6	1.58	5.191	0	0.009	GO:0009058 biosynthesis
208	MIT_012MYOD			after_TSS	93	776	11.9	7.6	1.57	4.762	0	0.0207	GO:0044249 cellular biosynthesis
209	MIT_015AP4			at_TSS	53	901	5.8	3.2	1.78	4.537	0	0.0616	GO:0008270 zinc ion binding
210	MIT_020E4F1			at_TSS	42	645	6.5	3.4	1.87	4.32	0	0.0187	GO:0006996 organelle organization and biogenesis
211	MIT_020E4F1			at_TSS	17	163	10.4	3.4	2.99	4.875	0	0.0029	GO:0006457 protein folding
212	MIT_020E4F1			at_TSS	15	74	20.2	3.4	5.82	7.907	0	0	GO:0042254 ribosome biogenesis and assembly
213	MIT_020E4F1			at_TSS	14	106	13.2	3.4	3.79	5.49	0	0.0001	GO:0051082 unfolded protein binding
214	MIT_020E4F1			at_TSS	11	86	12.7	3.4	3.67	4.729	0	0.0046	GO:0008135 translation factor activity, nucleic acid binding
215	MIT_020E4F1			at_TSS	11	90	12.2	3.4	3.51	4.543	0	0.0099	GO:0045182 translation regulator activity
216	MIT_021			at_TSS	15	82	18.2	2.7	6.68	8.666	0	0	GO:0007028 cytoplasm organization and biogenesis
217	MIT_021			at_TSS	14	74	18.9	2.7	6.91	8.561	0	0	GO:0042254 ribosome biogenesis and assembly
218	MIT_021			at_TSS	13	67	19.4	2.7	7.09	8.388	0	0	GO:0007046 ribosome biogenesis
219	MIT_021			at_TSS	11	108	10.1	2.7	3.72	4.768	0	0.0804	GO:0004518 nuclease activity
220	MIT_022			at_TSS	11	86	12.7	3.5	3.62	4.672	0	0.0214	GO:0006399 tRNA metabolism
221	MIT_024MAZ			after_TSS	61	492	12.3	7.2	1.72	4.548	0	0.078	GO:0045184 establishment of protein localization
222	MIT_024MAZ			after_TSS	60	476	12.6	7.2	1.74	4.648