CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_FOXD

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_FOXD
TF_FOXD alone
In pair
with
1GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
1420
before_TSS
114
yes
 
2GO:0030528 transcription regulator activity
941
before_TSS
82
yes
 
3GO:0048513 organ development
852
before_TSS
75
yes
 
4GO:0009653 morphogenesis
811
before_TSS
74
yes
 
5GO:0009887 organ morphogenesis
674
before_TSS
63
yes
 
6GO:0003700 transcription factor activity
719
before_TSS
63
yes
 
7GO:0009607 response to biotic stimulus
483
at_TSS
46
yes
 
8GO:0006952 defense response
463
at_TSS
46
yes
 
9GO:0003735 structural constituent of ribosome
172
before_TSS
44
yes
TF_STAT,
10GO:0004175 endopeptidase activity
397
before_TSS
41
 
TF_HNF3,
11GO:0006955 immune response
379
at_TSS
36
yes
 
12GO:0004386 helicase activity
108
before_TSS
32
yes
 
13GO:0007600 sensory perception
196
after_TSS
31
yes
 
14GO:0006259 DNA metabolism
427
before_TSS
28
 
TF_STAF,
15GO:0007399 nervous system development
301
before_TSS
27
yes
 
16GO:0004857 enzyme inhibitor activity
155
after_TSS
26
yes
 
17GO:0008026 ATP-dependent helicase activity
86
before_TSS
25
yes
MIT_033MEF2,
18GO:0004866 endopeptidase inhibitor activity
112
after_TSS
23
yes
 
19GO:0030414 protease inhibitor activity
112
after_TSS
23
yes
 
20GO:0006082 organic acid metabolism
350
before_TSS
22
 
TF_IK,
21GO:0019752 carboxylic acid metabolism
350
before_TSS
22
 
TF_IK,
22GO:0043207 response to external biotic stimulus
237
at_TSS
22
yes
 
23GO:0030246 carbohydrate binding
208
at_TSS
21
yes
 
24GO:0009613 response to pest, pathogen or parasite
221
before_TSS
20
 
TF_GATA,
25GO:0004867 serine-type endopeptidase inhibitor activity
77
after_TSS
18
yes
 
26GO:0005179 hormone activity
97
before_TSS,after_TSS
17
yes
TF_HFH,
27GO:0005529 sugar binding
144
at_TSS,before_TSS
16
yes
TF_GATA,
28GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
104
before_TSS
13
yes
 
29GO:0007608 perception of smell
37
after_TSS
11
yes
 
30GO:0016746 transferase activity, transferring acyl groups
101
before_TSS
11
 
TF_NF1,
31GO:0007606 sensory perception of chemical stimulus
40
after_TSS
11
yes
 
32GO:0016042 lipid catabolism
61
before_TSS
11
 
TF_MYC,
33GO:0001501 skeletal development
87
before_TSS
11
yes
 
34GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
33
after_TSS
10
yes
 
35GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
before_TSS
10
 
MIT_062,

Pairs of TF_FOXD binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_IK
before_TSS
2
GO:0019752 carboxylic acid metabolism
22
350
2TF_GATA
before_TSS
2
GO:0009613 response to pest, pathogen or parasite
20
221
3TF_STAT
before_TSS
1
GO:0003735 structural constituent of ribosome
15
172
4TF_STAF
before_TSS
1
GO:0006259 DNA metabolism
28
427
5MIT_033MEF2
before_TSS
1
GO:0008026 ATP-dependent helicase activity
12
86
6TF_HFH
before_TSS
1
GO:0005179 hormone activity
10
97
7TF_HNF3
before_TSS
1
GO:0004175 endopeptidase activity
41
397
8TF_MYC
before_TSS
1
GO:0016042 lipid catabolism
11
61
9TF_NF1
before_TSS
1
GO:0016746 transferase activity, transferring acyl groups
11
101
10MIT_062
before_TSS
1
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
10
91

Details on Gene Ontology terms for targets of TF_FOXD

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
114
1420
8
5.3
1.5
4.782
0
0
GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
2none
 
yes
before_TSS
82
941
8.7
5.3
1.63
4.782
0
0
GO:0030528 transcription regulator activity
3none
 
yes
before_TSS
75
852
8.8
5.3
1.64
4.652
0
0
GO:0048513 organ development
4none
 
yes
before_TSS
74
811
9.1
5.3
1.7
4.952
0
0
GO:0009653 morphogenesis
5none
 
yes
before_TSS
63
674
9.3
5.3
1.74
4.752
0
0
GO:0009887 organ morphogenesis
6none
 
yes
before_TSS
63
719
8.7
5.3
1.63
4.198
0
0.0001
GO:0003700 transcription factor activity
7none
 
 
at_TSS
46
483
9.5
5.3
1.78
4.177
0
0.0004
GO:0009607 response to biotic stimulus
8none
 
 
at_TSS
46
463
9.9
5.3
1.86
4.487
0
0.0001
GO:0006952 defense response
9none
yes
 
before_TSS
44
172
25.5
16.5
1.54
3.199
0.0013
0.056
GO:0003735 structural constituent of ribosome
10none
 
 
at_TSS
36
379
9.4
5.3
1.77
3.661
0.0002
0.0038
GO:0006955 immune response
11none
yes
 
before_TSS
32
108
29.6
16.5
1.78
3.664
0.0002
0.0151
GO:0004386 helicase activity
12none
 
 
at_TSS
31
356
8.7
5.3
1.63
2.871
0.004
0.0383
GO:0005576
13none
 
 
after_TSS
31
196
15.8
9.7
1.62
2.896
0.0037
0.0512
GO:0007600 sensory perception
14none
 
yes
before_TSS
29
302
9.6
5.3
1.79
3.33
0.0008
0.0045
GO:0005667
15none
 
yes
before_TSS
27
301
8.9
5.3
1.67
2.83
0.0046
0.0262
GO:0007399 nervous system development
16none
 
 
after_TSS
26
155
16.7
9.7
1.72
2.976
0.0029
0.0628
GO:0004857 enzyme inhibitor activity
17none
yes
 
before_TSS
25
86
29
16.5
1.75
3.127
0.0017
0.0718
GO:0008026 ATP-dependent helicase activity
18none
 
 
after_TSS
23
112
20.5
9.7
2.1
3.874
0.0001
0.0055
GO:0004866 endopeptidase inhibitor activity
19none
 
 
after_TSS
23
112
20.5
9.7
2.1
3.874
0.0001
0.0055
GO:0030414 protease inhibitor activity
20none
 
 
at_TSS
22
237
9.2
5.3
1.73
2.728
0.0063
0.0555
GO:0043207 response to external biotic stimulus
21none
 
 
at_TSS
21
208
10
5.3
1.89
3.079
0.002
0.0422
GO:0030246 carbohydrate binding
22none
 
 
after_TSS
18
77
23.3
9.7
2.4
4.051
0
0.0046
GO:0004867 serine-type endopeptidase inhibitor activity
23none
 
 
after_TSS
17
97
17.5
9.7
1.8
2.599
0.0093
0.09
GO:0005179 hormone activity
24none
 
 
at_TSS
16
144
11.1
5.3
2.08
3.1
0.0019
0.0472
GO:0005529 sugar binding
25none
 
yes
before_TSS
13
104
12.5
5.3
2.33
3.257
0.0011
0.0515
GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
26none
 
 
after_TSS
11
37
29.7
9.7
3.05
4.109
0
0.0036
GO:0007608 perception of smell
27none
 
yes
before_TSS
11
87
12.6
5.3
2.36
3.036
0.0023
0.0626
GO:0001501 skeletal development
28none
 
 
after_TSS
11
40
27.5
9.7
2.82
3.797
0.0001
0.0134
GO:0007606 sensory perception of chemical stimulus
29none
 
 
after_TSS
10
33
30.3
9.7
3.11
3.991
0
0.008
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
30MIT_033MEF2
 
 
before_TSS
12
86
13.9
3.9
3.55
4.806
0
0.0665
GO:0008026 ATP-dependent helicase activity
31MIT_062
 
 
before_TSS
10
91
10.9
2.3
4.58
5.38
0
0.0016
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
32TF_ARNT
 
 
before_TSS
12
56
21.4
5.4
3.91
5.257
0
0.0031
GO:0005777
33TF_GATA
 
 
before_TSS
20
221
9
3.5
2.57
4.502
0
0.0415
GO:0009613 response to pest, pathogen or parasite
34TF_GATA
 
 
before_TSS
14
144
9.7
3.5
2.76
4.063
0
0.0598
GO:0005529 sugar binding
35TF_HFH
yes
 
before_TSS
10
97
10.3
2.5
3.99
4.824
0
0.0121
GO:0005179 hormone activity
36TF_HNF3
yes
 
before_TSS
41
397
10.3
5.2
1.97
4.649
0
0.048
GO:0004175 endopeptidase activity
37TF_IK
 
 
before_TSS
22
350
6.2
2.3
2.67
4.94
0
0.0067
GO:0019752 carboxylic acid metabolism
38TF_IK
 
 
before_TSS
22
350
6.2
2.3
2.67
4.94
0
0.0067
GO:0006082 organic acid metabolism
39TF_MYC
 
 
before_TSS
11
61
18
4.6
3.85
4.952
0
0.0317
GO:0016042 lipid catabolism
40TF_NF1
 
 
before_TSS
11
101
10.8
2.9
3.74
4.793
0
0.071
GO:0016746 transferase activity, transferring acyl groups
41TF_SREBP
 
 
before_TSS
10
60
16.6
3.4
4.8
5.598
0
0.0009
GO:0009897
42TF_STAF
 
 
before_TSS
28
427
6.5
3.1
2.08
4.122
0
0.0312
GO:0006259 DNA metabolism
43TF_STAT
yes
 
before_TSS
15
172
8.7
2.5
3.4
5.149
0
0.0056
GO:0003735 structural constituent of ribosome