CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_FOXJ2

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_FOXJ2
TF_FOXJ2 alone
In pair
with
1GO:0009605 response to external stimulus
489
after_TSS
55
yes
 
2GO:0009607 response to biotic stimulus
483
after_TSS
45
yes
 
3GO:0007186 G-protein coupled receptor protein signaling pathway
495
after_TSS
45
yes
 
4GO:0006952 defense response
463
after_TSS
44
yes
 
5GO:0004930 G-protein coupled receptor activity
357
after_TSS
36
yes
 
6GO:0001584 rhodopsin-like receptor activity
283
after_TSS
31
yes
 
7GO:0009613 response to pest, pathogen or parasite
221
after_TSS
28
yes
 
8GO:0043207 response to external biotic stimulus
237
after_TSS
28
yes
 
9GO:0007600 sensory perception
196
after_TSS
22
yes
 
10GO:0006325 establishment and/or maintenance of chromatin architecture
179
before_TSS
18
 
MIT_013LEF, TF_MEIS,
11GO:0004857 enzyme inhibitor activity
155
at_TSS,after_TSS
17
yes
 
12GO:0007399 nervous system development
301
before_TSS
17
yes
 
13GO:0051276 chromosome organization and biogenesis
220
before_TSS
16
 
TF_MEIS,
14GO:0006333 chromatin assembly or disassembly
121
before_TSS
16
 
MIT_013LEF, TF_AP1, TF_MEIS,
15GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
before_TSS
16
 
TF_MEIS,
16GO:0031497 chromatin assembly
95
before_TSS
14
 
MIT_013LEF, TF_MEIS,
17GO:0006461 protein complex assembly
123
before_TSS
14
 
MIT_013LEF, TF_OCT, TF_MEIS,
18GO:0006334 nucleosome assembly
86
before_TSS
14
 
MIT_013LEF, TF_MEIS,
19GO:0004497 monooxygenase activity
90
after_TSS
14
yes
 
20GO:0005179 hormone activity
97
after_TSS
12
yes
 
21GO:0006066 alcohol metabolism
164
before_TSS
12
 
TF_CDX,
22GO:0004866 endopeptidase inhibitor activity
112
at_TSS
12
yes
 
23GO:0030414 protease inhibitor activity
112
at_TSS
12
yes
 
24GO:0030182 neuron differentiation
137
before_TSS
11
yes
 
25GO:0005529 sugar binding
144
at_TSS
10
yes
 
26GO:0046483 heterocycle metabolism
53
before_TSS
10
yes
 

Pairs of TF_FOXJ2 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_MEIS
before_TSS
7
GO:0051276 chromosome organization and biogenesis
16
220
2MIT_013LEF
before_TSS
5
GO:0006325 establishment and/or maintenance of chromatin architecture
18
179
3TF_CDX
before_TSS
1
GO:0006066 alcohol metabolism
12
164
4TF_AP1
before_TSS
1
GO:0006333 chromatin assembly or disassembly
11
121
5TF_OCT
before_TSS
1
GO:0006461 protein complex assembly
12
123

Details on Gene Ontology terms for targets of TF_FOXJ2

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
after_TSS
55
489
11.2
5.9
1.9
5.112
0
0
GO:0009605 response to external stimulus
2none
 
 
after_TSS
45
495
9
5.9
1.53
3.067
0.0021
0.0344
GO:0007186 G-protein coupled receptor protein signaling pathway
3none
 
 
after_TSS
45
483
9.3
5.9
1.57
3.243
0.0011
0.0081
GO:0009607 response to biotic stimulus
4none
 
 
after_TSS
44
463
9.5
5.9
1.6
3.346
0.0008
0.0065
GO:0006952 defense response
5none
 
 
after_TSS
36
357
10
5.9
1.7
3.397
0.0006
0.0124
GO:0004930 G-protein coupled receptor activity
6none
 
 
after_TSS
33
356
9.2
5.9
1.56
2.73
0.0063
0.0406
GO:0005576
7none
 
 
after_TSS
31
283
10.9
5.9
1.85
3.643
0.0002
0.007
GO:0001584 rhodopsin-like receptor activity
8none
 
 
after_TSS
28
237
11.8
5.9
1.99
3.895
0
0.0027
GO:0043207 response to external biotic stimulus
9none
 
 
after_TSS
28
221
12.6
5.9
2.14
4.303
0
0.0012
GO:0009613 response to pest, pathogen or parasite
10none
 
 
after_TSS
22
196
11.2
5.9
1.9
3.182
0.0014
0.0334
GO:0007600 sensory perception
11none
 
 
after_TSS
21
181
11.6
5.9
1.96
3.273
0.001
0.0778
GO:0005578
12none
 
yes
before_TSS
19
302
6.2
2.9
2.13
3.489
0.0004
0.0026
GO:0005667
13none
 
yes
before_TSS
17
301
5.6
2.9
1.92
2.814
0.0048
0.0267
GO:0007399 nervous system development
14none
 
 
after_TSS
17
155
10.9
5.9
1.85
2.689
0.0071
0.0936
GO:0004857 enzyme inhibitor activity
15none
 
 
after_TSS
14
90
15.5
5.9
2.63
3.896
0
0.0032
GO:0004497 monooxygenase activity
16none
 
 
at_TSS
13
155
8.3
2.8
2.99
4.242
0
0.0027
GO:0004857 enzyme inhibitor activity
17none
 
 
at_TSS
12
112
10.7
2.8
3.82
5.098
0
0.0001
GO:0030414 protease inhibitor activity
18none
 
 
after_TSS
12
97
12.3
5.9
2.09
2.71
0.0067
0.0684
GO:0005179 hormone activity
19none
 
 
at_TSS
12
112
10.7
2.8
3.82
5.098
0
0.0001
GO:0004866 endopeptidase inhibitor activity
20none
 
yes
before_TSS
11
137
8
2.9
2.72
3.544
0.0003
0.0096
GO:0030182 neuron differentiation
21none
yes
 
before_TSS
10
53
18.8
6.6
2.81
3.554
0.0003
0.0694
GO:0046483 heterocycle metabolism
22none
 
 
at_TSS
10
144
6.9
2.8
2.47
3.031
0.0024
0.0557
GO:0005529 sugar binding
23MIT_013LEF
 
 
before_TSS
18
179
10
4.3
2.33
3.819
0.0001
0.0562
GO:0006325 establishment and/or maintenance of chromatin architecture
24MIT_013LEF
 
 
before_TSS
16
121
13.2
4.3
3.07
4.857
0
0.0005
GO:0006333 chromatin assembly or disassembly
25MIT_013LEF
 
 
before_TSS
14
123
11.3
4.3
2.64
3.886
0.0001
0.0382
GO:0006461 protein complex assembly
26MIT_013LEF
 
 
before_TSS
14
86
16.2
4.3
3.78
5.49
0
0
GO:0006334 nucleosome assembly
27MIT_013LEF
 
 
before_TSS
14
95
14.7
4.3
3.42
5.029
0
0.0002
GO:0031497 chromatin assembly
28MIT_013LEF
 
 
before_TSS
12
78
15.3
4.3
3.57
4.836
0
0.0005
GO:0000786
29MIT_013LEF
 
 
before_TSS
12
88
13.6
4.3
3.16
4.328
0
0.0062
GO:0005694
30TF_AP1
 
 
before_TSS
11
121
9
2.3
3.86
4.91
0
0.0004
GO:0006333 chromatin assembly or disassembly
31TF_CDX
 
 
before_TSS
12
164
7.3
2
3.51
4.727
0
0.0984
GO:0006066 alcohol metabolism
32TF_MEIS
 
 
before_TSS
16
208
7.6
2.6
2.86
4.505
0
0.004
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
33TF_MEIS
 
 
before_TSS
16
220
7.2
2.6
2.7
4.247
0
0.0124
GO:0051276 chromosome organization and biogenesis
34TF_MEIS
 
 
before_TSS
13
179
7.2
2.6
2.7
3.816
0.0001
0.0558
GO:0006325 establishment and/or maintenance of chromatin architecture
35TF_MEIS
 
 
before_TSS
10
95
10.5
2.6
3.91
4.746
0
0.0008
GO:0031497 chromatin assembly
36TF_MEIS
 
 
before_TSS
10
121
8.2
2.6
3.07
3.815
0.0001
0.047
GO:0006333 chromatin assembly or disassembly
37TF_MEIS
 
 
before_TSS
10
86
11.6
2.6
4.33
5.148
0
0.0001
GO:0006334 nucleosome assembly
38TF_MEIS
 
 
before_TSS
10
88
11.3
2.6
4.23
5.054
0
0.0002
GO:0005694
39TF_MEIS
 
 
before_TSS
10
123
8.1
2.6
3.02
3.754
0.0001
0.0637
GO:0006461 protein complex assembly
40TF_OCT
 
 
before_TSS
12
123
9.7
3.4
2.86
3.904
0
0.0361
GO:0006461 protein complex assembly