CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_GFI

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_GFI
TF_GFI alone
In pair
with
1GO:0009607 response to biotic stimulus
483
before_TSS,after_TSS
83
yes
 
2GO:0006952 defense response
463
at_TSS,before_TSS,after_TSS
82
yes
 
3GO:0030528 transcription regulator activity
941
before_TSS
69
yes
 
4GO:0048513 organ development
852
before_TSS
66
yes
 
5GO:0009653 morphogenesis
811
before_TSS
66
yes
 
6GO:0009887 organ morphogenesis
674
before_TSS
56
yes
 
7GO:0006955 immune response
379
at_TSS,before_TSS
45
yes
 
8GO:0043207 response to external biotic stimulus
237
at_TSS,before_TSS,after_TSS
45
yes
 
9GO:0004263 chymotrypsin activity
90
before_TSS
43
yes
MIT_012MYOD,
10GO:0009613 response to pest, pathogen or parasite
221
at_TSS,before_TSS,after_TSS
43
yes
 
11GO:0003700 transcription factor activity
719
after_TSS
38
yes
 
12GO:0030154 cell differentiation
538
before_TSS
38
yes
 
13GO:0030246 carbohydrate binding
208
after_TSS
35
yes
 
14GO:0005529 sugar binding
144
after_TSS
27
yes
 
15GO:0007399 nervous system development
301
before_TSS
26
yes
 
16GO:0005102 receptor binding
406
at_TSS
22
yes
 
17GO:0006333 chromatin assembly or disassembly
121
at_TSS
18
yes
 
18GO:0006461 protein complex assembly
123
at_TSS
17
yes
 
19GO:0006959 humoral immune response
58
at_TSS,after_TSS
17
yes
 
20GO:0048468 cell development
162
before_TSS,after_TSS
16
yes
 
21GO:0031497 chromatin assembly
95
at_TSS
14
yes
 
22GO:0030182 neuron differentiation
137
before_TSS,after_TSS
14
yes
 
23GO:0005125 cytokine activity
173
at_TSS
13
yes
 
24GO:0006334 nucleosome assembly
86
at_TSS
13
yes
 
25GO:0016064 humoral defense mechanism (sensu Vertebrata)
39
after_TSS
12
yes
 
26GO:0005179 hormone activity
97
before_TSS
12
 
MIT_064AP1, MIT_097CDP, TF_OCT,
27GO:0000904 cellular morphogenesis during differentiation
107
before_TSS
12
yes
 
28GO:0051239 regulation of organismal physiological process
119
at_TSS
11
yes
 
29GO:0031175 neurite morphogenesis
96
before_TSS
11
yes
 
30GO:0048667 neuron morphogensis during differentiation
96
before_TSS
11
yes
 
31GO:0042127 regulation of cell proliferation
139
at_TSS
11
yes
 
32GO:0008134 transcription factor binding
110
before_TSS
11
 
TF_SREBP,
33GO:0006968 cellular defense response
37
after_TSS
11
yes
 
34GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
before_TSS
10
 
TF_LHX,
35GO:0006954 inflammatory response
101
before_TSS
10
 
TF_MAF,
36GO:0048666 neuron development
108
after_TSS
10
yes
 

Pairs of TF_GFI binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_SREBP
before_TSS
1
GO:0008134 transcription factor binding
11
110
2TF_OCT
before_TSS
1
GO:0005179 hormone activity
10
97
3MIT_064AP1
before_TSS
1
GO:0005179 hormone activity
12
97
4TF_LHX
before_TSS
1
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
10
91
5MIT_097CDP
before_TSS
1
GO:0005179 hormone activity
10
97
6TF_MAF
before_TSS
1
GO:0006954 inflammatory response
10
101
7MIT_012MYOD
before_TSS
1
GO:0004263 chymotrypsin activity
12
90

Details on Gene Ontology terms for targets of TF_GFI

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
after_TSS
83
483
17.1
10.9
1.56
4.479
0
0.0002
GO:0009607 response to biotic stimulus
2none
 
 
after_TSS
82
463
17.7
10.9
1.61
4.752
0
0
GO:0006952 defense response
3none
 
yes
before_TSS
69
941
7.3
4.6
1.56
4.002
0
0.0002
GO:0030528 transcription regulator activity
4none
 
yes
before_TSS
66
852
7.7
4.6
1.65
4.386
0
0.0001
GO:0048513 organ development
5none
 
yes
before_TSS
66
811
8.1
4.6
1.73
4.817
0
0
GO:0009653 morphogenesis
6none
 
yes
before_TSS
56
674
8.3
4.6
1.77
4.581
0
0
GO:0009887 organ morphogenesis
7none
 
 
at_TSS
50
463
10.7
7
1.52
3.189
0.0014
0.0108
GO:0006952 defense response
8none
yes
 
before_TSS
47
483
9.7
5.7
1.69
3.866
0.0001
0.0101
GO:0009607 response to biotic stimulus
9none
yes
 
before_TSS
46
463
9.9
5.7
1.73
3.975
0
0.0085
GO:0006952 defense response
10none
 
 
after_TSS
45
237
18.9
10.9
1.73
4.003
0
0.002
GO:0043207 response to external biotic stimulus
11none
 
 
at_TSS
45
379
11.8
7
1.67
3.703
0.0002
0.0033
GO:0006955 immune response
12none
 
 
before_TSS
43
90
47.7
30.6
1.55
3.542
0.0003
0.0363
GO:0004263 chymotrypsin activity
13none
 
 
after_TSS
43
221
19.4
10.9
1.77
4.088
0
0.0017
GO:0009613 response to pest, pathogen or parasite
14none
 
yes
after_TSS
38
719
5.2
2.8
1.87
4.103
0
0.0005
GO:0003700 transcription factor activity
15none
 
yes
before_TSS
38
538
7
4.6
1.5
2.67
0.0075
0.0487
GO:0030154 cell differentiation
16none
yes
 
before_TSS
37
379
9.7
5.7
1.7
3.436
0.0005
0.0432
GO:0006955 immune response
17none
 
 
after_TSS
35
208
16.8
10.9
1.53
2.739
0.0061
0.0751
GO:0030246 carbohydrate binding
18none
yes
 
before_TSS
29
237
12.2
5.7
2.13
4.356
0
0.0048
GO:0043207 response to external biotic stimulus
19none
 
yes
before_TSS
28
302
9.2
4.6
1.97
3.819
0.0001
0.0009
GO:0005667
20none
 
 
at_TSS
27
237
11.3
7
1.61
2.619
0.0088
0.0733
GO:0043207 response to external biotic stimulus
21none
yes
 
before_TSS
27
221
12.2
5.7
2.13
4.191
0
0.0101
GO:0009613 response to pest, pathogen or parasite
22none
 
 
after_TSS
27
144
18.7
10.9
1.71
3.016
0.0025
0.0334
GO:0005529 sugar binding
23none
 
 
at_TSS
27
221
12.2
7
1.72
3.01
0.0026
0.0298
GO:0009613 response to pest, pathogen or parasite
24none
 
yes
before_TSS
26
301
8.6
4.6
1.84
3.286
0.001
0.0077
GO:0007399 nervous system development
25none
 
yes
after_TSS
23
302
7.6
2.8
2.69
5.087
0
0
GO:0005667
26none
 
yes
at_TSS
22
406
5.4
2.7
1.94
3.281
0.001
0.054
GO:0005102 receptor binding
27none
 
 
at_TSS
18
121
14.8
7
2.1
3.364
0.0007
0.0117
GO:0006333 chromatin assembly or disassembly
28none
 
 
at_TSS
17
123
13.8
7
1.95
2.934
0.0033
0.0583
GO:0006461 protein complex assembly
29none
 
 
after_TSS
17
58
29.3
10.9
2.67
4.489
0
0.0006
GO:0006959 humoral immune response
30none
 
yes
before_TSS
16
162
9.8
4.6
2.1
3.148
0.0016
0.0261
GO:0048468 cell development
31none
 
yes
after_TSS
14
137
10.2
2.8
3.61
5.251
0
0
GO:0030182 neuron differentiation
32none
 
 
at_TSS
14
95
14.7
7
2.08
2.925
0.0034
0.045
GO:0031497 chromatin assembly
33none
 
 
at_TSS
14
88
15.9
7
2.24
3.245
0.0011
0.0226
GO:0005694
34none
 
yes
before_TSS
14
137
10.2
4.6
2.18
3.082
0.002
0.0268
GO:0030182 neuron differentiation
35none
 
yes
at_TSS
13
173
7.5
2.7
2.69
3.808
0.0001
0.017
GO:0005125 cytokine activity
36none
 
 
at_TSS
13
58
22.4
7
3.16
4.568
0
0.0018
GO:0006959 humoral immune response
37none
 
 
at_TSS
13
86
15.1
7
2.13
2.919
0.0035
0.0558
GO:0006334 nucleosome assembly
38none
 
 
after_TSS
12
39
30.7
10.9
2.81
3.97
0
0.0131
GO:0016064 humoral defense mechanism (sensu Vertebrata)
39none
 
yes
at_TSS
12
181
6.6
2.7
2.38
3.168
0.0015
0.0702
GO:0005578
40none
 
yes
before_TSS
12
107
11.2
4.6
2.39
3.21
0.0013
0.0347
GO:0000904 cellular morphogenesis during differentiation
41none
 
yes
before_TSS
11
96
11.4
4.6
2.44
3.153
0.0016
0.0454
GO:0048667 neuron morphogensis during differentiation
42none
 
yes
at_TSS
11
139
7.9
2.7
2.84
3.696
0.0002
0.0801
GO:0042127 regulation of cell proliferation
43none
 
yes
after_TSS
11
162
6.7
2.8
2.4
3.065
0.0021
0.0612
GO:0048468 cell development
44none
 
yes
at_TSS
11
119
9.2
2.7
3.31
4.303
0
0.002
GO:0051239 regulation of organismal physiological process
45none
 
 
after_TSS
11
37
29.7
10.9
2.71
3.664
0.0002
0.0908
GO:0006968 cellular defense response
46none
 
yes
before_TSS
11
96
11.4
4.6
2.44
3.153
0.0016
0.0454
GO:0031175 neurite morphogenesis
47none
 
yes
after_TSS
10
108
9.2
2.8
3.27
4.052
0
0.0061
GO:0048666 neuron development
48MIT_012MYOD
 
 
before_TSS
12
90
13.3
3.9
3.35
4.561
0
0.0733
GO:0004263 chymotrypsin activity
49MIT_013LEF
 
 
before_TSS
11
78
14.1
4.4
3.17
4.151
0
0.0121
GO:0000786
50MIT_064AP1
 
 
before_TSS
12
97
12.3
3
4.1
5.409
0
0.0009
GO:0005179 hormone activity
51MIT_097CDP
 
 
before_TSS
10
97
10.3
1.3
7.84
7.812
0
0
GO:0005179 hormone activity
52TF_LHX
 
 
before_TSS
10
91
10.9
2.9
3.74
4.571
0
0.0349
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
53TF_MAF
 
 
before_TSS
10
101
9.9
2.1
4.6
5.396
0
0.0029
GO:0006954 inflammatory response
54TF_NFY
 
 
at_TSS
10
88
11.3
1.5
7.16
7.367
0
0
GO:0005694
55TF_OCT
 
 
before_TSS
10
97
10.3
2.8
3.64
4.465
0
0.0432
GO:0005179 hormone activity
56TF_SREBP
 
 
before_TSS
11
110
10
2.8
3.47
4.491
0
0.0765
GO:0008134 transcription factor binding