CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_GR

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_GR
TF_GR alone
In pair
with
1GO:0009607 response to biotic stimulus
483
at_TSS
46
yes
 
2GO:0006952 defense response
463
at_TSS
46
yes
 
3GO:0009605 response to external stimulus
489
at_TSS
46
yes
 
4GO:0009613 response to pest, pathogen or parasite
221
at_TSS,after_TSS
42
yes
 
5GO:0006820 anion transport
156
after_TSS
38
yes
TF_ATF1,
6GO:0015698 inorganic anion transport
134
after_TSS
36
yes
 
7GO:0004857 enzyme inhibitor activity
155
at_TSS,after_TSS
31
yes
 
8GO:0004866 endopeptidase inhibitor activity
112
at_TSS,after_TSS
27
yes
 
9GO:0030414 protease inhibitor activity
112
at_TSS,after_TSS
27
yes
 
10GO:0006118 electron transport
329
before_TSS
27
yes
 
11GO:0043207 response to external biotic stimulus
237
at_TSS
26
yes
 
12GO:0030001 metal ion transport
288
before_TSS
21
yes
 
13GO:0008509 anion transporter activity
75
after_TSS
21
yes
 
14GO:0004295 trypsin activity
101
at_TSS
14
yes
 
15GO:0007389 pattern specification
128
after_TSS
13
yes
 
16GO:0007167 enzyme linked receptor protein signaling pathway
157
after_TSS
13
yes
 
17GO:0004263 chymotrypsin activity
90
at_TSS
12
yes
 
18GO:0006066 alcohol metabolism
164
before_TSS
12
 
TF_COUP,
19GO:0004497 monooxygenase activity
90
before_TSS
12
yes
 

Pairs of TF_GR binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_ATF1
after_TSS
1
GO:0006820 anion transport
10
156
2TF_COUP
before_TSS
1
GO:0006066 alcohol metabolism
12
164

Details on Gene Ontology terms for targets of TF_GR

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
46
463
9.9
6
1.65
3.617
0.0002
0.0032
GO:0006952 defense response
2none
 
 
at_TSS
46
489
9.4
6
1.56
3.22
0.0012
0.0126
GO:0009605 response to external stimulus
3none
 
 
at_TSS
46
483
9.5
6
1.58
3.309
0.0009
0.0085
GO:0009607 response to biotic stimulus
4none
 
 
after_TSS
42
221
19
12.6
1.5
2.868
0.0041
0.0387
GO:0009613 response to pest, pathogen or parasite
5none
 
 
after_TSS
38
156
24.3
12.6
1.92
4.428
0
0.0034
GO:0006820 anion transport
6none
 
 
at_TSS
38
356
10.6
6
1.77
3.752
0.0001
0.0035
GO:0005576
7none
 
 
after_TSS
36
134
26.8
12.6
2.12
4.977
0
0.0002
GO:0015698 inorganic anion transport
8none
 
 
after_TSS
31
155
20
12.6
1.58
2.77
0.0056
0.0789
GO:0004857 enzyme inhibitor activity
9none
 
 
after_TSS
27
112
24.1
12.6
1.9
3.664
0.0002
0.01
GO:0004866 endopeptidase inhibitor activity
10none
 
 
after_TSS
27
112
24.1
12.6
1.9
3.664
0.0002
0.01
GO:0030414 protease inhibitor activity
11none
yes
 
before_TSS
27
329
8.2
3.9
2.06
3.995
0
0.0236
GO:0006118 electron transport
12none
 
 
at_TSS
26
237
10.9
6
1.82
3.24
0.0011
0.0136
GO:0043207 response to external biotic stimulus
13none
 
 
at_TSS
25
221
11.3
6
1.88
3.342
0.0008
0.0126
GO:0009613 response to pest, pathogen or parasite
14none
 
 
after_TSS
21
75
28
12.6
2.21
4.011
0
0.0221
GO:0008509 anion transporter activity
15none
 
yes
before_TSS
21
288
7.2
3.7
1.96
3.265
0.001
0.0801
GO:0030001 metal ion transport
16none
 
 
at_TSS
18
155
11.6
6
1.93
2.949
0.0031
0.0686
GO:0004857 enzyme inhibitor activity
17none
 
 
at_TSS
15
112
13.3
6
2.22
3.299
0.0009
0.0295
GO:0030414 protease inhibitor activity
18none
 
 
at_TSS
15
112
13.3
6
2.22
3.299
0.0009
0.0295
GO:0004866 endopeptidase inhibitor activity
19none
 
 
at_TSS
14
101
13.8
6
2.3
3.33
0.0008
0.0211
GO:0004295 trypsin activity
20none
 
yes
after_TSS
13
128
10.1
3.3
3.03
4.306
0
0.0003
GO:0007389 pattern specification
21none
 
yes
after_TSS
13
157
8.2
3.3
2.47
3.459
0.0005
0.0496
GO:0007167 enzyme linked receptor protein signaling pathway
22none
yes
 
before_TSS
12
90
13.3
3.9
3.36
4.57
0
0.0008
GO:0004497 monooxygenase activity
23none
 
 
at_TSS
12
90
13.3
6
2.21
2.93
0.0033
0.0477
GO:0004263 chymotrypsin activity
24TF_ATF1
 
 
after_TSS
10
156
6.4
1.6
3.93
4.751
0
0.0874
GO:0006820 anion transport
25TF_COUP
 
 
before_TSS
12
164
7.3
2.1
3.45
4.661
0
0.0679
GO:0006066 alcohol metabolism