CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_HFH

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_HFH
TF_HFH alone
In pair
with
1GO:0030528 transcription regulator activity
941
before_TSS
74
yes
 
2GO:0009653 morphogenesis
811
before_TSS
63
yes
 
3GO:0003700 transcription factor activity
719
before_TSS
55
yes
 
4GO:0009887 organ morphogenesis
674
before_TSS
51
yes
 
5GO:0009607 response to biotic stimulus
483
at_TSS
46
yes
 
6GO:0006952 defense response
463
at_TSS
45
yes
 
7GO:0006955 immune response
379
at_TSS
35
yes
 
8GO:0007600 sensory perception
196
after_TSS
30
yes
 
9GO:0004857 enzyme inhibitor activity
155
after_TSS
26
yes
 
10GO:0006259 DNA metabolism
427
before_TSS
25
 
TF_STAF,
11GO:0005529 sugar binding
144
at_TSS,before_TSS,after_TSS
24
yes
MIT_029, TF_GATA,
12GO:0030246 carbohydrate binding
208
at_TSS
22
yes
 
13GO:0004866 endopeptidase inhibitor activity
112
after_TSS
20
yes
 
14GO:0030414 protease inhibitor activity
112
after_TSS
20
yes
 
15GO:0001501 skeletal development
87
before_TSS,after_TSS
18
yes
 
16GO:0004867 serine-type endopeptidase inhibitor activity
77
after_TSS
18
yes
 
17GO:0008236 serine-type peptidase activity
158
at_TSS
17
yes
 
18GO:0004497 monooxygenase activity
90
after_TSS
17
yes
 
19GO:0050790 regulation of enzyme activity
107
before_TSS
14
 
TF_IRF,
20GO:0031497 chromatin assembly
95
at_TSS
13
yes
 
21GO:0004295 trypsin activity
101
at_TSS
13
yes
 
22GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
93
before_TSS
12
 
TF_S8,
23GO:0001503 ossification
48
after_TSS
12
yes
 
24GO:0004263 chymotrypsin activity
90
at_TSS
12
yes
 
25GO:0007389 pattern specification
128
before_TSS
12
yes
 
26GO:0031214 biomineral formation
48
after_TSS
12
yes
 
27GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
85
before_TSS
11
 
TF_S8,
28GO:0005179 hormone activity
97
before_TSS
10
 
TF_FOXD,
29GO:0001614 purinergic nucleotide receptor activity
53
at_TSS
10
yes
 
30GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
33
after_TSS
10
yes
 
31GO:0001608 nucleotide receptor activity, G-protein coupled
53
at_TSS
10
yes
 
32GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
53
at_TSS
10
yes
 
33GO:0016502 nucleotide receptor activity
53
at_TSS
10
yes
 
34GO:0016829 lyase activity
121
before_TSS
10
 
TF_PAX4,

Pairs of TF_HFH binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_S8
before_TSS
2
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
12
93
2MIT_029
before_TSS
1
GO:0005529 sugar binding
15
144
3TF_STAF
before_TSS
1
GO:0006259 DNA metabolism
25
427
4TF_PAX4
before_TSS
1
GO:0016829 lyase activity
10
121
5TF_IRF
before_TSS
1
GO:0050790 regulation of enzyme activity
14
107
6TF_FOXD
before_TSS
1
GO:0005179 hormone activity
10
97
7TF_GATA
before_TSS
1
GO:0005529 sugar binding
13
144

Details on Gene Ontology terms for targets of TF_HFH

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
74
941
7.8
4.8
1.61
4.465
0
0
GO:0030528 transcription regulator activity
2none
 
yes
before_TSS
63
811
7.7
4.8
1.59
3.99
0
0.0004
GO:0009653 morphogenesis
3none
 
yes
before_TSS
55
719
7.6
4.8
1.57
3.589
0.0003
0.0013
GO:0003700 transcription factor activity
4none
 
yes
before_TSS
51
674
7.5
4.8
1.55
3.365
0.0007
0.0035
GO:0009887 organ morphogenesis
5none
 
 
at_TSS
46
483
9.5
5.5
1.71
3.889
0.0001
0.0012
GO:0009607 response to biotic stimulus
6none
 
 
at_TSS
45
463
9.7
5.5
1.75
3.992
0
0.001
GO:0006952 defense response
7none
 
 
at_TSS
35
379
9.2
5.5
1.66
3.18
0.0014
0.0138
GO:0006955 immune response
8none
 
 
after_TSS
30
196
15.3
9.7
1.56
2.614
0.0089
0.0992
GO:0007600 sensory perception
9none
 
yes
before_TSS
29
302
9.6
4.8
1.97
3.883
0.0001
0.0007
GO:0005667
10none
 
 
after_TSS
26
155
16.7
9.7
1.71
2.939
0.0032
0.0634
GO:0004857 enzyme inhibitor activity
11none
 
 
after_TSS
24
144
16.6
9.7
1.7
2.788
0.0053
0.057
GO:0005529 sugar binding
12none
 
 
at_TSS
22
208
10.5
5.5
1.9
3.191
0.0014
0.0324
GO:0030246 carbohydrate binding
13none
 
 
after_TSS
20
112
17.8
9.7
1.82
2.881
0.0039
0.063
GO:0030414 protease inhibitor activity
14none
 
 
after_TSS
20
112
17.8
9.7
1.82
2.881
0.0039
0.063
GO:0004866 endopeptidase inhibitor activity
15none
 
 
after_TSS
18
77
23.3
9.7
2.38
4.02
0
0.0042
GO:0004867 serine-type endopeptidase inhibitor activity
16none
 
 
after_TSS
18
87
20.6
9.7
2.11
3.428
0.0006
0.0556
GO:0001501 skeletal development
17none
 
 
at_TSS
17
158
10.7
5.5
1.93
2.876
0.004
0.0921
GO:0008236 serine-type peptidase activity
18none
 
 
at_TSS
17
144
11.8
5.5
2.12
3.296
0.0009
0.0276
GO:0005529 sugar binding
19none
 
 
after_TSS
17
90
18.8
9.7
1.92
2.911
0.0036
0.0507
GO:0004497 monooxygenase activity
20none
 
 
at_TSS
13
95
13.6
5.5
2.46
3.474
0.0005
0.0089
GO:0031497 chromatin assembly
21none
 
 
at_TSS
13
101
12.8
5.5
2.31
3.225
0.0012
0.0271
GO:0004295 trypsin activity
22none
 
yes
before_TSS
12
128
9.3
4.8
1.92
2.389
0.0168
0.0858
GO:0007389 pattern specification
23none
 
 
after_TSS
12
48
25
9.7
2.55
3.549
0.0003
0.0283
GO:0031214 biomineral formation
24none
 
 
after_TSS
12
48
25
9.7
2.55
3.549
0.0003
0.0283
GO:0001503 ossification
25none
 
yes
before_TSS
12
87
13.7
4.8
2.83
3.89
0.0001
0.0073
GO:0001501 skeletal development
26none
 
 
at_TSS
12
90
13.3
5.5
2.4
3.235
0.0012
0.0247
GO:0004263 chymotrypsin activity
27none
 
 
after_TSS
10
33
30.3
9.7
3.09
3.967
0
0.0066
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
28none
 
 
at_TSS
10
53
18.8
5.5
3.39
4.242
0
0.004
GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
29none
 
 
at_TSS
10
53
18.8
5.5
3.39
4.242
0
0.004
GO:0001614 purinergic nucleotide receptor activity
30none
 
 
at_TSS
10
53
18.8
5.5
3.39
4.242
0
0.004
GO:0001608 nucleotide receptor activity, G-protein coupled
31none
 
 
at_TSS
10
53
18.8
5.5
3.39
4.242
0
0.004
GO:0016502 nucleotide receptor activity
32MIT_029
 
 
before_TSS
15
144
10.4
3.7
2.81
4.293
0
0.0304
GO:0005529 sugar binding
33TF_FOXD
yes
 
before_TSS
10
97
10.3
2.5
3.99
4.824
0
0.0121
GO:0005179 hormone activity
34TF_GATA
 
 
before_TSS
13
144
9
2.8
3.15
4.468
0
0.0189
GO:0005529 sugar binding
35TF_IRF
 
 
before_TSS
14
107
13
4.1
3.16
4.665
0
0.0444
GO:0050790 regulation of enzyme activity
36TF_PAX4
 
 
before_TSS
10
121
8.2
2
3.95
4.77
0
0.0796
GO:0016829 lyase activity
37TF_S8
 
 
before_TSS
12
93
12.9
3.6
3.55
4.802
0
0.0678
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
38TF_S8
 
 
before_TSS
11
85
12.9
3.6
3.56
4.608
0
0.0878
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
39TF_STAF
 
 
before_TSS
25
427
5.8
2.3
2.49
4.875
0
0.0014
GO:0006259 DNA metabolism