CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_HLF

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_HLF
TF_HLF alone
In pair
with
1GO:0003677 DNA binding
1509
before_TSS
94
yes
 
2GO:0030528 transcription regulator activity
941
before_TSS
66
yes
 
3GO:0003700 transcription factor activity
719
before_TSS
57
yes
 
4GO:0016491 oxidoreductase activity
573
at_TSS
54
yes
 
5GO:0016070 RNA metabolism
342
at_TSS
37
yes
 
6GO:0007600 sensory perception
196
after_TSS
35
yes
 
7GO:0009605 response to external stimulus
489
before_TSS
31
 
TF_OCT,
8GO:0006396 RNA processing
273
at_TSS
29
yes
 
9GO:0005529 sugar binding
144
before_TSS,after_TSS
24
yes
MIT_033MEF2,
10GO:0007399 nervous system development
301
before_TSS
20
yes
 
11GO:0004497 monooxygenase activity
90
at_TSS,after_TSS
16
yes
 
12GO:0004866 endopeptidase inhibitor activity
112
at_TSS
14
yes
 
13GO:0030414 protease inhibitor activity
112
at_TSS
14
yes
 
14GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
at_TSS
13
yes
 
15GO:0048468 cell development
162
before_TSS
13
yes
 
16GO:0004518 nuclease activity
108
at_TSS
13
yes
 
17GO:0006399 tRNA metabolism
86
at_TSS
12
yes
 
18GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
before_TSS
12
 
MIT_007AP1, TF_MAF,
19GO:0009613 response to pest, pathogen or parasite
221
before_TSS
12
 
MIT_007AP1,
20GO:0030182 neuron differentiation
137
before_TSS
12
yes
 
21GO:0006333 chromatin assembly or disassembly
121
before_TSS
11
 
MIT_007AP1, TF_AP1, TF_MAF,
22GO:0006325 establishment and/or maintenance of chromatin architecture
179
before_TSS
11
 
MIT_007AP1, TF_MAF,
23GO:0000904 cellular morphogenesis during differentiation
107
before_TSS
11
yes
 
24GO:0051276 chromosome organization and biogenesis
220
before_TSS
11
 
MIT_007AP1,
25GO:0008009 chemokine activity
32
after_TSS
10
yes
 
26GO:0007608 perception of smell
37
after_TSS
10
yes
 
27GO:0006461 protein complex assembly
123
before_TSS
10
 
TF_AP1,
28GO:0006323 DNA packaging
188
before_TSS
10
 
MIT_007AP1,
29GO:0001664 G-protein-coupled receptor binding
37
after_TSS
10
yes
 
30GO:0042379 chemokine receptor binding
32
after_TSS
10
yes
 
31GO:0016337 cell-cell adhesion
99
before_TSS
10
 
TF_BRN,
32GO:0007606 sensory perception of chemical stimulus
40
after_TSS
10
yes
 
33GO:0007156 homophilic cell adhesion
76
before_TSS
10
 
TF_BRN,

Pairs of TF_HLF binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1MIT_007AP1
before_TSS
6
GO:0009613 response to pest, pathogen or parasite
12
221
2TF_MAF
before_TSS
3
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
12
208
3TF_AP1
before_TSS
2
GO:0006333 chromatin assembly or disassembly
11
121
4TF_BRN
before_TSS
2
GO:0007156 homophilic cell adhesion
10
76
5TF_OCT
before_TSS
1
GO:0009605 response to external stimulus
31
489
6MIT_033MEF2
before_TSS
1
GO:0005529 sugar binding
11
144

Details on Gene Ontology terms for targets of TF_HLF

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
94
1509
6.2
4
1.52
4.463
0
0
GO:0003677 DNA binding
2none
 
yes
before_TSS
66
941
7
4
1.71
4.697
0
0
GO:0030528 transcription regulator activity
3none
 
yes
before_TSS
57
719
7.9
4
1.93
5.34
0
0
GO:0003700 transcription factor activity
4none
 
 
at_TSS
54
573
9.4
5.2
1.81
4.657
0
0.0005
GO:0016491 oxidoreductase activity
5none
 
 
at_TSS
37
342
10.8
5.2
2.07
4.74
0
0
GO:0016070 RNA metabolism
6none
 
 
after_TSS
35
196
17.8
9.6
1.84
3.917
0
0.0036
GO:0007600 sensory perception
7none
 
 
at_TSS
29
273
10.6
5.2
2.04
4.075
0
0.0006
GO:0006396 RNA processing
8none
 
 
after_TSS
24
144
16.6
9.6
1.72
2.863
0.0041
0.0511
GO:0005529 sugar binding
9none
 
yes
before_TSS
21
302
6.9
4
1.69
2.534
0.0112
0.0382
GO:0005667
10none
 
yes
before_TSS
20
301
6.6
4
1.62
2.256
0.024
0.0937
GO:0007399 nervous system development
11none
 
 
after_TSS
16
90
17.7
9.6
1.84
2.617
0.0088
0.0901
GO:0004497 monooxygenase activity
12none
 
 
at_TSS
15
90
16.6
5.2
3.2
4.912
0
0.0001
GO:0004497 monooxygenase activity
13none
 
 
after_TSS
15
60
25
9.6
2.58
4.032
0
0.0025
GO:0009897
14none
 
 
at_TSS
14
112
12.5
5.2
2.4
3.491
0.0004
0.0195
GO:0030414 protease inhibitor activity
15none
 
 
at_TSS
14
112
12.5
5.2
2.4
3.491
0.0004
0.0195
GO:0004866 endopeptidase inhibitor activity
16none
 
 
at_TSS
13
91
14.2
5.2
2.74
3.914
0
0.0066
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
17none
 
yes
before_TSS
13
162
8
4
1.95
2.537
0.0111
0.0998
GO:0048468 cell development
18none
 
 
at_TSS
13
108
12
5.2
2.31
3.21
0.0013
0.0694
GO:0004518 nuclease activity
19none
 
yes
before_TSS
12
137
8.7
4
2.13
2.767
0.0056
0.053
GO:0030182 neuron differentiation
20none
 
 
at_TSS
12
86
13.9
5.2
2.68
3.665
0.0002
0.009
GO:0006399 tRNA metabolism
21none
 
yes
before_TSS
11
107
10.2
4
2.5
3.239
0.0011
0.0337
GO:0000904 cellular morphogenesis during differentiation
22none
 
 
after_TSS
10
40
25
9.6
2.58
3.289
0.001
0.0525
GO:0007606 sensory perception of chemical stimulus
23none
 
 
after_TSS
10
37
27
9.6
2.79
3.581
0.0003
0.0417
GO:0001664 G-protein-coupled receptor binding
24none
 
 
after_TSS
10
32
31.2
9.6
3.23
4.14
0
0.0042
GO:0008009 chemokine activity
25none
 
yes
before_TSS
10
51
19.6
4
4.78
5.598
0
0
GO:0000785
26none
 
 
after_TSS
10
37
27
9.6
2.79
3.581
0.0003
0.0208
GO:0007608 perception of smell
27none
 
 
after_TSS
10
32
31.2
9.6
3.23
4.14
0
0.0042
GO:0042379 chemokine receptor binding
28MIT_007AP1
 
 
before_TSS
12
221
5.4
1.6
3.25
4.404
0
0.051
GO:0009613 response to pest, pathogen or parasite
29MIT_007AP1
 
 
before_TSS
11
208
5.2
1.6
3.16
4.11
0
0.0196
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
30MIT_007AP1
 
 
before_TSS
11
220
5
1.6
2.99
3.892
0
0.0447
GO:0051276 chromosome organization and biogenesis
31MIT_007AP1
 
 
before_TSS
10
179
5.5
1.6
3.34
4.121
0
0.0183
GO:0006325 establishment and/or maintenance of chromatin architecture
32MIT_007AP1
 
 
before_TSS
10
121
8.2
1.6
4.95
5.691
0
0
GO:0006333 chromatin assembly or disassembly
33MIT_007AP1
 
 
before_TSS
10
188
5.3
1.6
3.18
3.937
0
0.0349
GO:0006323 DNA packaging
34MIT_033MEF2
 
 
before_TSS
11
144
7.6
2.2
3.38
4.376
0
0.0248
GO:0005529 sugar binding
35TF_AP1
 
 
before_TSS
11
121
9
2.7
3.3
4.284
0
0.007
GO:0006333 chromatin assembly or disassembly
36TF_AP1
 
 
before_TSS
10
123
8.1
2.7
2.95
3.665
0.0002
0.0855
GO:0006461 protein complex assembly
37TF_BRN
 
 
before_TSS
10
76
13.1
2.7
4.82
5.601
0
0.0009
GO:0007156 homophilic cell adhesion
38TF_BRN
 
 
before_TSS
10
99
10.1
2.7
3.7
4.523
0
0.0658
GO:0016337 cell-cell adhesion
39TF_MAF
 
 
before_TSS
12
208
5.7
2.1
2.7
3.663
0.0002
0.0979
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
40TF_MAF
 
 
before_TSS
11
121
9
2.1
4.26
5.326
0
0
GO:0006333 chromatin assembly or disassembly
41TF_MAF
 
 
before_TSS
11
179
6.1
2.1
2.88
3.745
0.0001
0.0728
GO:0006325 establishment and/or maintenance of chromatin architecture
42TF_OCT
 
 
before_TSS
31
489
6.3
3
2.09
4.37
0
0.0894
GO:0009605 response to external stimulus