CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_HNF4

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_HNF4
TF_HNF4 alone
In pair
with
1GO:0016491 oxidoreductase activity
573
at_TSS
109
yes
 
2GO:0006091 generation of precursor metabolites and energy
492
at_TSS,after_TSS
83
yes
ADD_LRH,
3GO:0003700 transcription factor activity
719
before_TSS
78
yes
 
4GO:0006118 electron transport
329
at_TSS
62
yes
 
5GO:0030528 transcription regulator activity
941
before_TSS
48
 
TF_NFKB,
6GO:0030246 carbohydrate binding
208
at_TSS
35
yes
 
7GO:0005179 hormone activity
97
after_TSS
30
yes
 
8GO:0004263 chymotrypsin activity
90
at_TSS,after_TSS
30
yes
MIT_012MYOD,
9GO:0004857 enzyme inhibitor activity
155
at_TSS
29
yes
 
10GO:0004497 monooxygenase activity
90
at_TSS
22
yes
MIT_051TATA,
11GO:0003723 RNA binding
354
after_TSS
22
 
TF_HTF,
12GO:0004295 trypsin activity
101
at_TSS,after_TSS
20
yes
MIT_012MYOD,
13GO:0016192 vesicle-mediated transport
228
before_TSS
19
 
MIT_029,
14GO:0007389 pattern specification
128
before_TSS,after_TSS
16
yes
 
15GO:0006732 coenzyme metabolism
159
after_TSS
16
 
TF_AHR, TF_MYB,
16GO:0050878 regulation of body fluids
48
at_TSS
14
yes
 
17GO:0007599 hemostasis
45
at_TSS
14
yes
 
18GO:0007596 blood coagulation
43
at_TSS
13
yes
 
19GO:0015399 primary active transporter activity
168
after_TSS
13
 
ADD_LRH,
20GO:0050817 coagulation
44
at_TSS
13
yes
 
21GO:0000279 M phase
122
before_TSS
13
 
TF_GABP,
22GO:0007417 central nervous system development
76
before_TSS
13
yes
 
23GO:0015077 monovalent inorganic cation transporter activity
138
after_TSS
12
 
TF_SREBP, ADD_LRH,
24GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
33
at_TSS
12
yes
 
25GO:0050381 unspecific monooxygenase activity
22
at_TSS
11
yes
 
26GO:0009201 ribonucleoside triphosphate biosynthesis
71
before_TSS
11
 
TF_AML,
27GO:0015078 hydrogen ion transporter activity
133
after_TSS
11
 
ADD_LRH,
28GO:0009199 ribonucleoside triphosphate metabolism
74
before_TSS
11
 
TF_AML,
29GO:0016741 transferase activity, transferring one-carbon groups
101
before_TSS
11
 
TF_POLYA,
30GO:0009206 purine ribonucleoside triphosphate biosynthesis
71
before_TSS
11
 
TF_AML,
31GO:0007420 brain development
63
before_TSS
11
yes
 
32GO:0009145 purine nucleoside triphosphate biosynthesis
71
before_TSS
11
 
TF_AML,
33GO:0008168 methyltransferase activity
98
before_TSS
11
 
TF_POLYA,
34GO:0009205 purine ribonucleoside triphosphate metabolism
74
before_TSS
11
 
TF_AML,
35GO:0009142 nucleoside triphosphate biosynthesis
74
before_TSS
11
 
TF_AML,
36GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
at_TSS
10
 
MIT_051TATA,
37GO:0051186 cofactor metabolism
181
after_TSS
10
 
TF_MYB,
38GO:0006633 fatty acid biosynthesis
48
before_TSS
10
 
TF_AHR,

Pairs of TF_HNF4 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_AML
before_TSS
6
GO:0009206 purine ribonucleoside triphosphate biosynthesis
11
71
2ADD_LRH
after_TSS
4
GO:0006091 generation of precursor metabolites and energy
27
492
3MIT_051TATA
at_TSS
2
GO:0004497 monooxygenase activity
12
90
4TF_POLYA
before_TSS
2
GO:0016741 transferase activity, transferring one-carbon groups
11
101
5TF_MYB
after_TSS
2
GO:0051186 cofactor metabolism
10
181
6MIT_012MYOD
after_TSS
2
GO:0004263 chymotrypsin activity
12
90
7TF_AHR
before_TSS,after_TSS
2
GO:0006732 coenzyme metabolism
16
159
8MIT_029
before_TSS
1
GO:0016192 vesicle-mediated transport
19
228
9TF_SREBP
after_TSS
1
GO:0015077 monovalent inorganic cation transporter activity
11
138
10TF_GABP
before_TSS
1
GO:0000279 M phase
13
122
11TF_NFKB
before_TSS
1
GO:0030528 transcription regulator activity
48
941
12TF_HTF
after_TSS
1
GO:0003723 RNA binding
22
354

Details on Gene Ontology terms for targets of TF_HNF4

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
109
573
19
10.9
1.73
6.325
0
0
GO:0016491 oxidoreductase activity
2none
 
 
at_TSS
83
492
16.8
10.9
1.53
4.28
0
0.0068
GO:0006091 generation of precursor metabolites and energy
3none
 
yes
before_TSS
78
719
10.8
7.2
1.5
3.884
0.0001
0.0005
GO:0003700 transcription factor activity
4none
 
 
at_TSS
62
329
18.8
10.9
1.71
4.638
0
0.0012
GO:0006118 electron transport
5none
 
yes
before_TSS
43
302
14.2
7.2
1.97
4.778
0
0
GO:0005667
6none
 
yes
after_TSS
39
302
12.9
6.8
1.88
4.216
0
0.0003
GO:0005667
7none
 
 
at_TSS
35
208
16.8
10.9
1.53
2.729
0.0063
0.083
GO:0030246 carbohydrate binding
8none
 
 
after_TSS
30
90
33.3
20.4
1.62
3.032
0.0024
0.0635
GO:0004263 chymotrypsin activity
9none
 
 
after_TSS
30
97
30.9
20.4
1.5
2.559
0.0104
0.0985
GO:0005179 hormone activity
10none
 
 
at_TSS
29
155
18.7
10.9
1.7
3.106
0.0018
0.0533
GO:0004857 enzyme inhibitor activity
11none
 
yes
at_TSS
25
356
7
3.7
1.88
3.344
0.0008
0.0604
GO:0005576
12none
 
 
at_TSS
22
90
24.4
10.9
2.22
4.108
0
0.0014
GO:0004497 monooxygenase activity
13none
 
 
at_TSS
21
97
21.6
10.9
1.97
3.381
0.0007
0.044
GO:0005792
14none
 
 
at_TSS
20
101
19.8
10.9
1.8
2.854
0.0043
0.0718
GO:0004295 trypsin activity
15none
 
 
at_TSS
19
90
21.1
10.9
1.92
3.092
0.0019
0.033
GO:0004263 chymotrypsin activity
16none
 
yes
before_TSS
16
128
12.5
7.2
1.73
2.324
0.0201
0.0995
GO:0007389 pattern specification
17none
 
yes
after_TSS
16
128
12.5
6.8
1.82
2.539
0.0111
0.0904
GO:0007389 pattern specification
18none
 
 
at_TSS
14
45
31.1
10.9
2.83
4.333
0
0.0026
GO:0007599 hemostasis
19none
 
 
at_TSS
14
48
29.1
10.9
2.66
4.044
0
0.0096
GO:0050878 regulation of body fluids
20none
 
 
at_TSS
13
43
30.2
10.9
2.75
4.05
0
0.0093
GO:0007596 blood coagulation
21none
 
yes
before_TSS
13
76
17.1
7.2
2.37
3.343
0.0008
0.0104
GO:0007417 central nervous system development
22none
 
 
at_TSS
13
44
29.5
10.9
2.69
3.951
0
0.0142
GO:0050817 coagulation
23none
 
 
at_TSS
12
33
36.3
10.9
3.31
4.676
0
0.0003
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
24none
 
 
at_TSS
11
22
50
10.9
4.56
5.865
0
0
GO:0050381 unspecific monooxygenase activity
25none
 
yes
before_TSS
11
63
17.4
7.2
2.42
3.152
0.0016
0.0269
GO:0007420 brain development
26ADD_LRH
 
 
after_TSS
27
492
5.4
2
2.62
5.377
0
0.0032
GO:0006091 generation of precursor metabolites and energy
27ADD_LRH
 
 
after_TSS
13
168
7.7
2
3.7
5.152
0
0.0037
GO:0015399 primary active transporter activity
28ADD_LRH
 
 
after_TSS
12
138
8.6
2
4.15
5.454
0
0.0003
GO:0015077 monovalent inorganic cation transporter activity
29ADD_LRH
 
 
after_TSS
11
133
8.2
2
3.95
5.009
0
0.0039
GO:0015078 hydrogen ion transporter activity
30MIT_012MYOD
 
 
after_TSS
12
90
13.3
3.2
4.12
5.44
0
0.0023
GO:0004263 chymotrypsin activity
31MIT_012MYOD
 
 
after_TSS
12
101
11.8
3.2
3.67
4.937
0
0.0342
GO:0004295 trypsin activity
32MIT_029
 
 
before_TSS
19
228
8.3
2.9
2.84
4.892
0
0.0215
GO:0016192 vesicle-mediated transport
33MIT_051TATA
 
 
at_TSS
12
90
13.3
0.7
18.98
14.402
0
0
GO:0004497 monooxygenase activity
34MIT_051TATA
 
 
at_TSS
11
97
11.3
0.7
16.14
12.596
0
0
GO:0005792
35MIT_051TATA
 
 
at_TSS
10
91
10.9
0.7
15.64
11.794
0
0
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
36MIT_055NFAT
 
 
after_TSS
20
356
5.6
2.3
2.36
4.069
0
0.06
GO:0005576
37TF_AHR
 
 
after_TSS
41
547
7.4
3.6
2.06
4.935
0
0.0086
GO:0005739
38TF_AHR
 
 
after_TSS
16
159
10
3.6
2.76
4.358
0
0.063
GO:0006732 coenzyme metabolism
39TF_AHR
 
 
before_TSS
10
48
20.8
5.1
4.02
4.902
0
0.0409
GO:0006633 fatty acid biosynthesis
40TF_AML
 
 
before_TSS
11
71
15.4
4.1
3.69
4.76
0
0.0418
GO:0009201 ribonucleoside triphosphate biosynthesis
41TF_AML
 
 
before_TSS
11
74
14.8
4.1
3.54
4.59
0
0.0957
GO:0009142 nucleoside triphosphate biosynthesis
42TF_AML
 
 
before_TSS
11
74
14.8
4.1
3.54
4.59
0
0.0957
GO:0009199 ribonucleoside triphosphate metabolism
43TF_AML
 
 
before_TSS
11
74
14.8
4.1
3.54
4.59
0
0.0957
GO:0009205 purine ribonucleoside triphosphate metabolism
44TF_AML
 
 
before_TSS
11
71
15.4
4.1
3.69
4.76
0
0.0418
GO:0009206 purine ribonucleoside triphosphate biosynthesis
45TF_AML
 
 
before_TSS
11
71
15.4
4.1
3.69
4.76
0
0.0418
GO:0009145 purine nucleoside triphosphate biosynthesis
46TF_GABP
 
 
before_TSS
13
122
10.6
3.1
3.4
4.795
0
0.0703
GO:0000279 M phase
47TF_HTF
 
 
after_TSS
22
354
6.2
2.6
2.37
4.299
0
0.0322
GO:0003723 RNA binding
48TF_MYB
 
 
after_TSS
10
159
6.2
1.5
4.18
4.99
0
0.0052
GO:0006732 coenzyme metabolism
49TF_MYB
 
 
after_TSS
10
181
5.5
1.5
3.67
4.478
0
0.0325
GO:0051186 cofactor metabolism
50TF_NFKB
 
 
before_TSS
48
941
5.1
2.9
1.74
4.146
0
0.0384
GO:0030528 transcription regulator activity
51TF_POLYA
 
 
before_TSS
11
101
10.8
2.8
3.77
4.828
0
0.0298
GO:0016741 transferase activity, transferring one-carbon groups
52TF_POLYA
 
 
before_TSS
11
98
11.2
2.8
3.89
4.954
0
0.0157
GO:0008168 methyltransferase activity
53TF_SREBP
 
 
after_TSS
11
138
7.9
2.2
3.61
4.637
0
0.0169
GO:0015077 monovalent inorganic cation transporter activity