CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_LHX

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_LHX
TF_LHX alone
In pair
with
1GO:0007275 development
1378
before_TSS
113
yes
 
2GO:0009653 morphogenesis
811
before_TSS
79
yes
 
3GO:0030528 transcription regulator activity
941
before_TSS
78
yes
 
4GO:0048513 organ development
852
before_TSS
76
yes
 
5GO:0009887 organ morphogenesis
674
before_TSS
68
yes
 
6GO:0003700 transcription factor activity
719
before_TSS
63
yes
 
7GO:0009605 response to external stimulus
489
at_TSS,after_TSS
58
yes
 
8GO:0009607 response to biotic stimulus
483
at_TSS,after_TSS
57
yes
 
9GO:0006952 defense response
463
after_TSS
56
yes
 
10GO:0050874 organismal physiological process
881
at_TSS
54
yes
 
11GO:0006955 immune response
379
after_TSS
47
yes
 
12GO:0005102 receptor binding
406
after_TSS
45
yes
 
13GO:0030154 cell differentiation
538
before_TSS
45
yes
 
14GO:0007399 nervous system development
301
before_TSS
38
yes
 
15GO:0043207 response to external biotic stimulus
237
at_TSS,after_TSS
29
yes
 
16GO:0009613 response to pest, pathogen or parasite
221
at_TSS,before_TSS,after_TSS
26
yes
TF_EF1D,
17GO:0030246 carbohydrate binding
208
after_TSS
26
yes
 
18GO:0009611 response to wounding
180
after_TSS
24
yes
 
19GO:0005386 carrier activity
394
at_TSS
20
yes
 
20GO:0005529 sugar binding
144
after_TSS
20
yes
 
21GO:0051276 chromosome organization and biogenesis
220
before_TSS
17
 
TF_CEBP,
22GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
before_TSS
16
 
TF_CEBP,
23GO:0004857 enzyme inhibitor activity
155
at_TSS
14
yes
 
24GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
before_TSS
14
 
MIT_155, TF_GFI,
25GO:0007417 central nervous system development
76
before_TSS
13
yes
 
26GO:0005179 hormone activity
97
at_TSS,before_TSS
13
yes
MIT_064AP1, TF_POU3F,
27GO:0015291 porter activity
170
at_TSS
13
yes
 
28GO:0015290 electrochemical potential-driven transporter activity
171
at_TSS
13
yes
 
29GO:0007420 brain development
63
before_TSS
12
yes
 

Pairs of TF_LHX binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_CEBP
before_TSS
2
GO:0051276 chromosome organization and biogenesis
17
220
2MIT_155
before_TSS
1
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
14
91
3TF_GFI
before_TSS
1
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
10
91
4MIT_064AP1
before_TSS
1
GO:0005179 hormone activity
13
97
5TF_POU3F
before_TSS
1
GO:0005179 hormone activity
13
97
6TF_EF1D
before_TSS
1
GO:0009613 response to pest, pathogen or parasite
12
221

Details on Gene Ontology terms for targets of TF_LHX

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
113
1378
8.2
5.3
1.52
4.949
0
0
GO:0007275 development
2none
 
yes
before_TSS
79
811
9.7
5.3
1.81
5.715
0
0
GO:0009653 morphogenesis
3none
 
yes
before_TSS
78
941
8.2
5.3
1.54
4.135
0
0.0001
GO:0030528 transcription regulator activity
4none
 
yes
before_TSS
76
852
8.9
5.3
1.66
4.766
0
0
GO:0048513 organ development
5none
 
yes
before_TSS
68
674
10
5.3
1.87
5.591
0
0
GO:0009887 organ morphogenesis
6none
 
yes
before_TSS
63
719
8.7
5.3
1.63
4.159
0
0.0001
GO:0003700 transcription factor activity
7none
 
 
after_TSS
58
489
11.8
7.2
1.63
3.999
0
0.0008
GO:0009605 response to external stimulus
8none
 
 
after_TSS
57
483
11.8
7.2
1.62
3.922
0
0.0011
GO:0009607 response to biotic stimulus
9none
 
 
after_TSS
56
463
12
7.2
1.66
4.085
0
0.0008
GO:0006952 defense response
10none
 
 
at_TSS
54
881
6.1
4
1.5
3.222
0.0012
0.0179
GO:0050874 organismal physiological process
11none
 
 
after_TSS
47
379
12.4
7.2
1.7
3.916
0
0.0029
GO:0006955 immune response
12none
 
yes
before_TSS
45
538
8.3
5.3
1.55
3.15
0.0016
0.0161
GO:0030154 cell differentiation
13none
 
 
after_TSS
45
406
11
7.2
1.52
3.017
0.0025
0.0549
GO:0005102 receptor binding
14none
 
 
after_TSS
41
356
11.5
7.2
1.58
3.139
0.0016
0.0159
GO:0005576
15none
 
yes
before_TSS
38
301
12.6
5.3
2.35
5.653
0
0
GO:0007399 nervous system development
16none
 
yes
before_TSS
37
302
12.2
5.3
2.28
5.371
0
0
GO:0005667
17none
 
 
at_TSS
35
489
7.1
4
1.76
3.534
0.0004
0.0055
GO:0009605 response to external stimulus
18none
 
 
at_TSS
30
483
6.2
4
1.52
2.437
0.0148
0.0722
GO:0009607 response to biotic stimulus
19none
 
 
after_TSS
29
237
12.2
7.2
1.68
2.979
0.0028
0.0278
GO:0043207 response to external biotic stimulus
20none
 
 
after_TSS
26
221
11.7
7.2
1.61
2.602
0.0092
0.0678
GO:0009613 response to pest, pathogen or parasite
21none
 
 
after_TSS
26
208
12.5
7.2
1.72
2.935
0.0033
0.053
GO:0030246 carbohydrate binding
22none
 
 
after_TSS
24
180
13.3
7.2
1.83
3.161
0.0015
0.0575
GO:0009611 response to wounding
23none
 
 
at_TSS
24
356
6.7
4
1.65
2.595
0.0094
0.0629
GO:0005576
24none
yes
 
before_TSS
21
136
15.4
8
1.92
3.212
0.0013
0.0689
GO:0005840
25none
 
 
after_TSS
20
144
13.8
7.2
1.91
3.082
0.002
0.0289
GO:0005529 sugar binding
26none
 
yes
at_TSS
20
394
5
1.4
3.55
6.199
0
0
GO:0005386 carrier activity
27none
 
 
at_TSS
18
237
7.5
4
1.86
2.778
0.0054
0.05
GO:0043207 response to external biotic stimulus
28none
 
 
at_TSS
17
221
7.6
4
1.89
2.755
0.0058
0.055
GO:0009613 response to pest, pathogen or parasite
29none
 
 
at_TSS
14
155
9
4
2.22
3.151
0.0016
0.0496
GO:0004857 enzyme inhibitor activity
30none
 
yes
at_TSS
13
170
7.6
1.4
5.34
6.877
0
0
GO:0015291 porter activity
31none
 
yes
at_TSS
13
171
7.6
1.4
5.31
6.848
0
0
GO:0015290 electrochemical potential-driven transporter activity
32none
 
yes
before_TSS
13
76
17.1
5.3
3.18
4.552
0
0.0001
GO:0007417 central nervous system development
33none
 
yes
before_TSS
12
63
19
5.3
3.54
4.827
0
0
GO:0007420 brain development
34none
 
 
at_TSS
10
97
10.3
4
2.53
3.126
0.0017
0.0498
GO:0005179 hormone activity
35MIT_064AP1
 
 
before_TSS
13
97
13.4
3.9
3.42
4.844
0
0.0137
GO:0005179 hormone activity
36MIT_155
 
 
before_TSS
14
91
15.3
3.8
4.01
5.76
0
0.0003
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
37TF_CEBP
 
 
before_TSS
17
220
7.7
3.1
2.48
3.974
0
0.0335
GO:0051276 chromosome organization and biogenesis
38TF_CEBP
 
 
before_TSS
16
208
7.6
3.1
2.46
3.833
0.0001
0.0541
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
39TF_EF1D
 
 
before_TSS
12
221
5.4
1.7
3.12
4.245
0
0.0858
GO:0009613 response to pest, pathogen or parasite
40TF_GFI
 
 
before_TSS
10
91
10.9
2.9
3.74
4.571
0
0.0349
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
41TF_POU3F
 
 
before_TSS
13
97
13.4
4.2
3.16
4.497
0
0.0425
GO:0005179 hormone activity