CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_MEISHOX

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_MEISHOX
TF_MEISHOX alone
In pair
with
1GO:0050874 organismal physiological process
881
at_TSS
76
yes
 
2GO:0030528 transcription regulator activity
941
before_TSS
70
yes
 
3GO:0003700 transcription factor activity
719
before_TSS
61
yes
 
4GO:0009607 response to biotic stimulus
483
at_TSS
49
yes
 
5GO:0006952 defense response
463
at_TSS
48
yes
 
6GO:0006950 response to stress
546
at_TSS
48
yes
 
7GO:0009605 response to external stimulus
489
at_TSS
47
yes
 
8GO:0004295 trypsin activity
101
before_TSS
42
yes
TF_BRN,
9GO:0006955 immune response
379
at_TSS,before_TSS
41
yes
TF_MZF,
10GO:0004263 chymotrypsin activity
90
before_TSS
39
yes
MIT_017IRF, TF_BRN,
11GO:0009613 response to pest, pathogen or parasite
221
at_TSS
32
yes
 
12GO:0043207 response to external biotic stimulus
237
at_TSS
32
yes
 
13GO:0009611 response to wounding
180
at_TSS
23
yes
 
14GO:0004866 endopeptidase inhibitor activity
112
after_TSS
22
yes
 
15GO:0030414 protease inhibitor activity
112
after_TSS
22
yes
 
16GO:0007610 behavior
229
before_TSS
18
yes
 
17GO:0004497 monooxygenase activity
90
after_TSS
17
yes
 
18GO:0008236 serine-type peptidase activity
158
before_TSS
16
yes
TF_BRN, MIT_023CHX,
19GO:0006631 fatty acid metabolism
116
at_TSS
16
yes
 
20GO:0004252 serine-type endopeptidase activity
140
before_TSS
15
yes
TF_BRN, MIT_023CHX,
21GO:0006954 inflammatory response
101
at_TSS
15
yes
 
22GO:0007600 sensory perception
196
before_TSS
14
 
TF_GATA,
23GO:0005179 hormone activity
97
at_TSS
13
yes
 
24GO:0046483 heterocycle metabolism
53
after_TSS
13
yes
 
25GO:0051276 chromosome organization and biogenesis
220
after_TSS
13
yes
 
26GO:0008237 metallopeptidase activity
177
before_TSS
12
 
TF_RP58,
27GO:0050776 regulation of immune response
72
at_TSS
11
yes
 
28GO:0006325 establishment and/or maintenance of chromatin architecture
179
after_TSS
11
yes
 
29GO:0004222 metalloendopeptidase activity
99
before_TSS
10
 
TF_RP58,

Pairs of TF_MEISHOX binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_BRN
before_TSS
4
GO:0008236 serine-type peptidase activity
12
158
2MIT_023CHX
before_TSS
2
GO:0008236 serine-type peptidase activity
10
158
3TF_RP58
before_TSS
2
GO:0008237 metallopeptidase activity
12
177
4MIT_017IRF
before_TSS
1
GO:0004263 chymotrypsin activity
11
90
5TF_MZF
before_TSS
1
GO:0006955 immune response
20
379
6TF_GATA
before_TSS
1
GO:0007600 sensory perception
14
196

Details on Gene Ontology terms for targets of TF_MEISHOX

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
76
881
8.6
5.4
1.58
4.307
0
0.0007
GO:0050874 organismal physiological process
2none
 
yes
before_TSS
70
941
7.4
4.3
1.69
4.741
0
0
GO:0030528 transcription regulator activity
3none
 
yes
before_TSS
61
719
8.4
4.3
1.93
5.513
0
0
GO:0003700 transcription factor activity
4none
 
 
at_TSS
49
483
10.1
5.4
1.86
4.634
0
0
GO:0009607 response to biotic stimulus
5none
 
 
at_TSS
48
463
10.3
5.4
1.9
4.748
0
0
GO:0006952 defense response
6none
 
 
at_TSS
48
546
8.7
5.4
1.61
3.515
0.0004
0.0201
GO:0006950 response to stress
7none
 
 
at_TSS
47
489
9.6
5.4
1.76
4.133
0
0.0007
GO:0009605 response to external stimulus
8none
 
 
before_TSS
42
101
41.5
26.4
1.57
3.463
0.0005
0.0651
GO:0004295 trypsin activity
9none
 
 
at_TSS
41
379
10.8
5.4
1.98
4.673
0
0
GO:0006955 immune response
10none
 
 
before_TSS
39
90
43.3
26.4
1.63
3.645
0.0002
0.0326
GO:0004263 chymotrypsin activity
11none
 
 
at_TSS
35
356
9.8
5.4
1.8
3.692
0.0002
0.0042
GO:0005576
12none
 
 
at_TSS
32
237
13.5
5.4
2.47
5.511
0
0
GO:0043207 response to external biotic stimulus
13none
 
 
at_TSS
32
221
14.4
5.4
2.65
5.964
0
0
GO:0009613 response to pest, pathogen or parasite
14none
 
yes
before_TSS
31
302
10.2
4.3
2.33
5.038
0
0
GO:0005667
15none
 
 
at_TSS
23
180
12.7
5.4
2.34
4.36
0
0.0005
GO:0009611 response to wounding
16none
 
 
after_TSS
22
112
19.6
10.3
1.89
3.226
0.0012
0.0287
GO:0030414 protease inhibitor activity
17none
 
 
after_TSS
22
112
19.6
10.3
1.89
3.226
0.0012
0.0287
GO:0004866 endopeptidase inhibitor activity
18none
 
yes
before_TSS
18
229
7.8
4.3
1.78
2.582
0.0098
0.0971
GO:0007610 behavior
19none
 
 
after_TSS
17
90
18.8
10.3
1.81
2.653
0.0079
0.0834
GO:0004497 monooxygenase activity
20none
 
 
at_TSS
16
116
13.7
5.4
2.52
3.974
0
0.0258
GO:0006631 fatty acid metabolism
21none
 
yes
after_TSS
16
302
5.2
2.7
1.96
2.817
0.0048
0.0311
GO:0005667
22none
 
 
after_TSS
16
56
28.5
10.3
2.75
4.47
0
0.0028
GO:0005777
23none
yes
 
before_TSS
16
158
10.1
4.3
2.31
3.553
0.0003
0.0696
GO:0008236 serine-type peptidase activity
24none
yes
 
before_TSS
15
140
10.7
4.3
2.44
3.684
0.0002
0.042
GO:0004252 serine-type endopeptidase activity
25none
 
 
at_TSS
15
101
14.8
5.4
2.72
4.176
0
0.0015
GO:0006954 inflammatory response
26none
yes
 
before_TSS
13
101
12.8
4.3
2.93
4.188
0
0.0051
GO:0004295 trypsin activity
27none
 
 
after_TSS
13
53
24.5
10.3
2.36
3.382
0.0007
0.0877
GO:0046483 heterocycle metabolism
28none
 
 
at_TSS
13
97
13.4
5.4
2.45
3.461
0.0005
0.0218
GO:0005179 hormone activity
29none
 
yes
after_TSS
13
220
5.9
2.7
2.18
2.96
0.003
0.0511
GO:0051276 chromosome organization and biogenesis
30none
yes
 
before_TSS
12
90
13.3
4.3
3.04
4.166
0
0.0056
GO:0004263 chymotrypsin activity
31none
 
 
at_TSS
11
72
15.2
5.4
2.8
3.682
0.0002
0.0282
GO:0050776 regulation of immune response
32none
 
yes
after_TSS
11
179
6.1
2.7
2.27
2.862
0.0042
0.0855
GO:0006325 establishment and/or maintenance of chromatin architecture
33MIT_017IRF
 
 
before_TSS
11
90
12.2
3.4
3.55
4.591
0
0.0953
GO:0004263 chymotrypsin activity
34MIT_023CHX
 
 
before_TSS
10
158
6.3
1.3
4.64
5.418
0
0.0026
GO:0008236 serine-type peptidase activity
35MIT_023CHX
 
 
before_TSS
10
140
7.1
1.3
5.23
5.931
0
0.0001
GO:0004252 serine-type endopeptidase activity
36TF_BRN
 
 
before_TSS
12
158
7.5
2.3
3.22
4.372
0
0.0886
GO:0008236 serine-type peptidase activity
37TF_BRN
 
 
before_TSS
12
140
8.5
2.3
3.63
4.878
0
0.0154
GO:0004252 serine-type endopeptidase activity
38TF_BRN
 
 
before_TSS
10
90
11.1
2.3
4.71
5.498
0
0.0016
GO:0004263 chymotrypsin activity
39TF_BRN
 
 
before_TSS
10
101
9.9
2.3
4.2
5.022
0
0.022
GO:0004295 trypsin activity
40TF_GATA
 
 
before_TSS
14
196
7.1
2.2
3.15
4.629
0
0.0396
GO:0007600 sensory perception
41TF_MZF
 
 
before_TSS
20
379
5.2
1.7
2.94
5.193
0
0.0044
GO:0006955 immune response
42TF_RP58
 
 
before_TSS
12
177
6.7
1.6
4
5.282
0
0.0055
GO:0008237 metallopeptidase activity
43TF_RP58
 
 
before_TSS
11
181
6
1.6
3.58
4.604
0
0.0895
GO:0005578
44TF_RP58
 
 
before_TSS
10
99
10.1
1.6
5.96
6.509
0
0
GO:0004222 metalloendopeptidase activity