CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_MRF2

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_MRF2
TF_MRF2 alone
In pair
with
1GO:0016491 oxidoreductase activity
573
after_TSS
71
yes
 
2GO:0009605 response to external stimulus
489
after_TSS
61
yes
 
3GO:0008270 zinc ion binding
901
before_TSS
47
yes
 
4GO:0050874 organismal physiological process
881
at_TSS
45
yes
 
5GO:0006118 electron transport
329
after_TSS
42
yes
 
6GO:0050877 neurophysiological process
312
after_TSS
37
yes
 
7GO:0043207 response to external biotic stimulus
237
after_TSS
28
yes
 
8GO:0009613 response to pest, pathogen or parasite
221
after_TSS
27
yes
 
9GO:0009607 response to biotic stimulus
483
at_TSS
26
yes
 
10GO:0007600 sensory perception
196
after_TSS
26
yes
 
11GO:0006952 defense response
463
at_TSS
26
yes
 
12GO:0004866 endopeptidase inhibitor activity
112
before_TSS,after_TSS
17
yes
MIT_174,
13GO:0030414 protease inhibitor activity
112
before_TSS,after_TSS
17
yes
MIT_174,
14GO:0042578 phosphoric ester hydrolase activity
222
before_TSS
16
 
TF_ELK,
15GO:0004497 monooxygenase activity
90
after_TSS
16
yes
 
16GO:0030100 regulation of endocytosis
22
before_TSS
14
yes
 
17GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
before_TSS
14
 
TF_HNF3,
18GO:0004263 chymotrypsin activity
90
after_TSS
14
yes
 
19GO:0050953 sensory perception of light
64
after_TSS
13
yes
 
20GO:0009611 response to wounding
180
before_TSS
13
 
TF_BARBIE,
21GO:0007601 visual perception
64
after_TSS
13
yes
 
22GO:0004867 serine-type endopeptidase inhibitor activity
77
after_TSS
13
yes
 
23GO:0005179 hormone activity
97
before_TSS
12
 
MIT_073LEF,
24GO:0008236 serine-type peptidase activity
158
at_TSS,before_TSS
12
yes
TF_ETS,
25GO:0008135 translation factor activity, nucleic acid binding
86
before_TSS
10
 
TF_HTF,
26GO:0016209 antioxidant activity
39
after_TSS
10
yes
 
27GO:0005529 sugar binding
144
before_TSS
10
 
ADD_OCT4A,
28GO:0045182 translation regulator activity
90
before_TSS
10
 
TF_HTF,

Pairs of TF_MRF2 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_HTF
before_TSS
2
GO:0045182 translation regulator activity
10
90
2MIT_174
before_TSS
2
GO:0030414 protease inhibitor activity
11
112
3ADD_OCT4A
before_TSS
1
GO:0005529 sugar binding
10
144
4MIT_073LEF
before_TSS
1
GO:0005179 hormone activity
12
97
5TF_ETS
before_TSS
1
GO:0008236 serine-type peptidase activity
10
158
6TF_HNF3
before_TSS
1
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
14
91
7TF_BARBIE
before_TSS
1
GO:0009611 response to wounding
13
180
8TF_ELK
before_TSS
1
GO:0042578 phosphoric ester hydrolase activity
16
222

Details on Gene Ontology terms for targets of TF_MRF2

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
after_TSS
71
573
12.3
7.6
1.62
4.412
0
0.0012
GO:0016491 oxidoreductase activity
2none
 
 
after_TSS
61
489
12.4
7.6
1.63
4.132
0
0.0006
GO:0009605 response to external stimulus
3none
 
yes
before_TSS
47
901
5.2
3.1
1.66
3.715
0.0002
0.0743
GO:0008270 zinc ion binding
4none
 
 
at_TSS
45
881
5.1
3.3
1.54
3.09
0.002
0.0215
GO:0050874 organismal physiological process
5none
 
 
after_TSS
42
329
12.7
7.6
1.67
3.568
0.0003
0.0658
GO:0006118 electron transport
6none
 
 
after_TSS
37
312
11.8
7.6
1.55
2.86
0.0042
0.0969
GO:0050877 neurophysiological process
7none
 
 
after_TSS
28
237
11.8
7.6
1.55
2.459
0.0139
0.0822
GO:0043207 response to external biotic stimulus
8none
 
 
after_TSS
27
221
12.2
7.6
1.6
2.601
0.0092
0.0667
GO:0009613 response to pest, pathogen or parasite
9none
 
 
at_TSS
26
463
5.6
3.3
1.69
2.822
0.0047
0.0291
GO:0006952 defense response
10none
 
 
after_TSS
26
196
13.2
7.6
1.74
3.004
0.0026
0.0443
GO:0007600 sensory perception
11none
 
 
at_TSS
26
483
5.3
3.3
1.62
2.593
0.0095
0.0477
GO:0009607 response to biotic stimulus
12none
 
 
at_TSS
22
356
6.1
3.3
1.86
3.067
0.0021
0.0232
GO:0005576
13none
 
 
after_TSS
17
97
17.5
7.6
2.3
3.693
0.0002
0.0405
GO:0005792
14none
 
 
after_TSS
17
112
15.1
7.6
1.99
3.03
0.0024
0.0471
GO:0004866 endopeptidase inhibitor activity
15none
 
 
after_TSS
17
112
15.1
7.6
1.99
3.03
0.0024
0.0471
GO:0030414 protease inhibitor activity
16none
 
 
after_TSS
16
90
17.7
7.6
2.33
3.646
0.0002
0.0069
GO:0004497 monooxygenase activity
17none
 
 
after_TSS
14
90
15.5
7.6
2.04
2.849
0.0043
0.0764
GO:0004263 chymotrypsin activity
18none
 
 
before_TSS
14
22
63.6
27.3
2.32
3.814
0.0001
0.05
GO:0030100 regulation of endocytosis
19none
 
 
after_TSS
13
77
16.8
7.6
2.21
3.074
0.0021
0.0594
GO:0004867 serine-type endopeptidase inhibitor activity
20none
 
 
after_TSS
13
64
20.3
7.6
2.66
3.838
0.0001
0.0151
GO:0007601 visual perception
21none
 
 
after_TSS
13
64
20.3
7.6
2.66
3.838
0.0001
0.0151
GO:0050953 sensory perception of light
22none
 
 
at_TSS
12
158
7.5
3.3
2.29
3.026
0.0024
0.0647
GO:0008236 serine-type peptidase activity
23none
 
 
after_TSS
10
39
25.6
7.6
3.36
4.249
0
0.0078
GO:0016209 antioxidant activity
24ADD_OCT4A
 
 
before_TSS
10
144
6.9
1.9
3.53
4.327
0
0.0284
GO:0005529 sugar binding
25MIT_073LEF
 
 
before_TSS
12
97
12.3
3.8
3.2
4.37
0
0.0596
GO:0005179 hormone activity
26MIT_174
 
 
before_TSS
11
112
9.8
2.4
3.94
5.007
0
0.0119
GO:0030414 protease inhibitor activity
27MIT_174
 
 
before_TSS
11
112
9.8
2.4
3.94
5.007
0
0.0119
GO:0004866 endopeptidase inhibitor activity
28TF_BARBIE
 
 
before_TSS
13
180
7.2
2.1
3.37
4.747
0
0.0446
GO:0009611 response to wounding
29TF_ELK
 
 
before_TSS
16
222
7.2
2.5
2.85
4.497
0
0.0992
GO:0042578 phosphoric ester hydrolase activity
30TF_ETS
 
 
before_TSS
10
158
6.3
1.8
3.51
4.307
0
0.0893
GO:0008236 serine-type peptidase activity
31TF_HNF3
 
 
before_TSS
14
91
15.3
4.9
3.11
4.614
0
0.0341
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
32TF_HTF
 
 
before_TSS
10
86
11.6
2.8
4.12
4.955
0
0.0104
GO:0008135 translation factor activity, nucleic acid binding
33TF_HTF
 
 
before_TSS
10
90
11.1
2.8
3.94
4.772
0
0.0197
GO:0045182 translation regulator activity
34TF_POU6F
 
 
before_TSS
13
136
9.5
2.9
3.26
4.617
0
0.056
GO:0005840